Aperture is asking to upgrade library every time I open the application, even after it has already been upgraded.  I just ran the update and it is still not fixed.  What can I do???

Aperture is asking to upgrade library every time I open the application, even after it has already been upgraded.  I just ran the update and it is still not fixed.  What can I do???  My plug are asking me to re-register them too.  This is annoying.  Please help!!!!!

How do you try to start the repair dialogue? By starting Aperture or by opening the Library?
If you not already have tried it with directly opening the library: 
reveal your Aperture Library in the Finder
Whilst holding down Command(⌘)- option (⌥) double click on the Aperture Library.
Select "repair library" from the dialogue.
What about Frank Caggiano's questions above?
It would be really helpful to know, how many libraries you have, and if this problem is restricted to one of them.

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