Applications are missing after reinstall, etc.

Hi, and thanks in advance for any assistance.
After a reinstall, which had to be done after trying to create more startup disk space after stuff was backed up to an external HD (I hope that makes sense) some applications are missing from the applications folder. For example, Backup used to be there, with the little umbrella icon, and Canoscan used to be there, etc., but now to find them I have to go through Spotlight. I can access them that way, but how can I get their icons back into the applications folder, and why'd they vanish??
Thanks,
Kcat

Hi, Miriam, and thanks for responding.
My internal Mac HD is 74.4GB. Used 73.3GB. Available 1.79GB.
My external Mufasa HD is 148 GB. Used 92.1 GB. Available 55.9 GB.
In the midst of the horror (See my Question: "Startup Disk almost full. What do I do now?") Apple had me do an Erase and Install. I did indeed accidentally re-transfer all of my date from Mufasa back to Mac HD, but Apple worked with me to remedy much of that, though I couldn't repeat the myriad steps to accomplish that to you! I'm not even sure myself! I am not sure why I have so little room on Mac HD after all of this.
Would the next step be to start burning data to CD-R or CD-RW disks? I'm not sure. I seem to need much of what I've saved, though I've deleted some stuff, of course. I have never burned a CD before. Is there a brand of CD that you recommend to do this? Any advice would be appreciated.
Thank you for "Whatsize": As per your suggestion, I downloaded it and used that to give you the above info.
Yes, Carolyn's idea about reinstalling Canon was a perfect confirmation!
It helps me to know that others have gone through the weird subscription issue. I'll try your suggestion.
Thanks again, Miriam,
Kcat

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Applications are missing after reinstall, etc.

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