Backup Failed, I need HELP!!!!!

I picked up my MacBook Pro 17, from the Apple store. Apple replaced the Hard Drive and my Optical Drive. Before I sent my machine to the Apple store, I backed up everything with Time Machine.
I got it home and started to restore my system from what time machine has stored on my external hard drive. After about 2 hours, during the few mins, I noticed that the program was hung up on 1 min for like 30 to 45mins. I stopped my machine. I forced a shut down and rebooted.
I restarted my computer and noticed that most of my applications were there, but my documents folder was empty, my music folder was empty and my photos folder was empty also.
My Question . . .
I still have the full back up on my external drive. Can I go to Disk Utility and Erase All data on my hard drive. Open Migration Assistant and restore my back up from the hard drive all over again?

This is really odd, there are no songs in my music, no photos on iphotos, no addresses is address book, no book marks in safari. Now I'm wondering if time machine backs up that kind of information?

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