Can I still use my computer during a backup with Carbon Copy Cloner?

just as the title says

In general yes, but you may notice a slowdown of the app you use due to competition for CPU.
An exception, though, to the 'yes' would be that it is not advisable to have a database open during cloning.
Depending on your Mac and its RAM you may get a growth of swapfiles. Keep an eye on the contents of /var/vm/. If you experience unexpected sluggishness you may need a re-boot to clear all but swapfile0.
A suggestion: set a schedule for when you are in bed asleep! 
Andreas (a moderator at the bombich forums)

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