ColdFusion 10 - MySQL Communications link failure

We are migrating some websites onto a cloud infrastructure running Windows 2008 virtual machines.  These websites all run on ColdFusion with MySQL databases.  They currently are running in our CoLo with no problems.  Additionally, they are running on our development network in our offices with no problems.
We are setting up our cloud to match as closely as possible the configuration we currently use which is, essentially, CF10 + IIS on one server and MySQL on a separate machine.  We are 99% finished and most things are running great.  However....
We have run into a couple, as in 2, places where we click a link/button and are greeted with:
Error Executing Database Query.
Communications link failure The last packet successfully received from the server was 0 milliseconds ago. The last packet sent successfully to the server was 0 milliseconds ago.
Scanning the stack-trace I also find:
`Caused by: java.net.SocketException: Connection reset`
The communications link error is ALWAYS: 0ms.
What's most puzzling is the Queries that seem to be causing this are *simple* queries that are used ALL OVER the sites with no problems.  Why they are failing at hese 2 particular places has us at wits end.
Our only clue is, looking at the CF Error description of what scripts are called, we can see the script where the query is failing is getting called twice?  For example, one of the occurences is in our Application file:
    >The error occurred in D:/Our_Web_Sites/oursite/Application.cfm: line 73
    >Called from D:/Our_Web_Sites/oursite/Application.cfm: line 17
    >Called from D:/Our_Web_Sites/oursite/Application.cfm: line 1
    >Called from D:/Our_Web_Sites/oursite/Application.cfm: line 73
    >Called from D:/Our_Web_Sites/oursite/Application.cfm: line 17
    >Called from D:/Our_Web_Sites/oursite/Application.cfm: line 1
We can find nothing in our CF code that would be causing the script to be called twice so our guess is the first call is failing on the Query so CF tries again...only to fail and error.
Googling this issue I've found lots of posts about changing the MySQL timeouts.  None of those worked and I didn't expect them to since what we're dealing with doesn't appear to be a timeout issue.  These pages fail each and every time.
The closest we've come to a solution came from this blog posting:
http://www.talkingtree.com/blog/index.cfm/2011/1/12/Validation-Query-for-MySQL-communicati ons-link-failure
If we UNCHECK the "Maintain connections across client requests. " setting in CFAdmin then the error goes away.  The blog suggests leaving that checked, which is our preference, and using Connection Validation of "SELECT 1;".  Try that...same error.
We've also tried the JDBC AutoConnect=true option.  No effect.
Downloaded latest JDBC Connector and used it instead of standard CF10-MySQL connector.  No effect.
Again, 99% of the site works with the exception of these two links, both of which work just fine in all our other environments.  Any other ideas?

I have some questions.
1) You talk of 2 calls. However, you show us 5 calls from Application.cfm. What do those line numbers tell us?
2) Shouldn't that be AutoReconnect=true rather than AutoConnect=true? In any case, it seems that the problem here is that ColdFusion attempts to use a stale connection to the database. It is then usually preferable to change wait_timeout instead. The MySQL documentation says, 'Alternatively[to AutoReconnect=true], as a last option, investigate setting the MySQL server variable "wait_timeout" to a high value, rather than the default of 8 hours.'.
3) Shouldn't you already convert to Application.cfc?

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    *Jul  6 11:28:53 PDT: %LINK-SW1-3-UPDOWN: Interface TenGigabitEthernet2/2/5, changed state to up
    *Jul  6 11:29:53 PDT: %LINEPROTO-SW1-5-UPDOWN: Line protocol on Interface TenGigabitEthernet2/2/5, changed state to up
    *Jul  7 06:27:25 PDT: %LINEPROTO-SW1-5-UPDOWN: Line protocol on Interface TenGigabitEthernet2/2/5, changed state to down
    *Jul  7 06:27:25 PDT: %LINK-SW1-3-UPDOWN: Interface TenGigabitEthernet2/2/5, changed state to down
    *Jul  7 06:27:26 PDT: %LINK-SW1-3-UPDOWN: Interface TenGigabitEthernet2/2/5, changed state to up
    *Jul  7 06:27:33 PDT: %LINEPROTO-SW1-5-UPDOWN: Line protocol on Interface TenGigabitEthernet2/2/5, changed state to up
    *Jul  7 06:33:43 PDT: %LINEPROTO-SW1-5-UPDOWN: Line protocol on Interface TenGigabitEthernet2/2/5, changed state to down
    *Jul  7 06:33:43 PDT: %LINK-SW1-3-UPDOWN: Interface TenGigabitEthernet2/2/5, changed state to down
    *Jul  7 06:33:43 PDT: %LINK-SW1-3-UPDOWN: Interface TenGigabitEthernet2/2/5, changed state to up
    *Jul  7 06:34:43 PDT: %LINEPROTO-SW1-5-UPDOWN: Line protocol on Interface TenGigabitEthernet2/2/5, changed state to up
    *Jul  7 07:38:35 PDT: %LINEPROTO-SW1-5-UPDOWN: Line protocol on Interface TenGigabitEthernet2/2/5, changed state to down
    *Jul  7 07:38:35 PDT: %LINK-SW1-3-UPDOWN: Interface TenGigabitEthernet2/2/5, changed state to down
    *Jul  7 07:38:36 PDT: %LINK-SW1-3-UPDOWN: Interface TenGigabitEthernet2/2/5, changed state to up
    log for VSL link failures
    *Jun 27 23:59:25 PDT: %VSLP-SW2-3-VSLP_LMP_FAIL_REASON: Te2/5/15: Link down
    *Jun 27 23:59:25 PDT: %VSL-SW2-5-VSL_CNTRL_LINK:  New VSL Control Link  2/5/16 
    *Jun 27 23:59:25 PDT: %LINEPROTO-SW2-5-UPDOWN: Line protocol on Interface TenGigabitEthernet2/5/15, changed state to down
    *Jun 27 23:59:25 PDT: %LINEPROTO-SW2-5-UPDOWN: Line protocol on Interface TenGigabitEthernet1/5/15, changed state to down
    *Jun 27 23:59:25 PDT: %LINK-SW2-3-UPDOWN: Interface TenGigabitEthernet2/5/15, changed state to down
    *Jun 27 23:59:25 PDT: %VSLP-SW2-3-VSLP_LMP_FAIL_REASON: Te2/5/16: Link down
    *Jun 27 23:59:25 PDT: %VSLP-SW2-2-VSL_DOWN:   Last VSL interface Te2/5/16 went down
    *Jun 27 23:59:25 PDT: %VSLP-SW2-2-VSL_DOWN:   All VSL links went down while switch is in ACTIVE role
    *Jun 27 23:59:25 PDT: %LINEPROTO-SW2-5-UPDOWN: Line protocol on Interface TenGigabitEthernet2/5/16, changed state to down
    *Jun 27 23:59:25 PDT: %LINEPROTO-SW2-5-UPDOWN: Line protocol on Interface Port-channel2, changed state to down
    *Jun 27 23:59:25 PDT: %LINK-SW2-3-UPDOWN: Interface Port-channel2, changed state to down
    *Jun 27 23:59:25 PDT: %LINK-SW2-3-UPDOWN: Interface TenGigabitEthernet2/5/16, changed state to down
    *Jun 27 23:59:25 PDT: %LINEPROTO-SW2-5-UPDOWN: Line protocol on Interface Port-channel1, changed state to down
    *Jun 27 23:59:25 PDT: %LINK-SW2-3-UPDOWN: Interface Port-channel1, changed state to down
    *Jun 27 23:59:25 PDT: %OIR-SW2-6-INSREM: Switch 1 Physical Slot 5 - Module Type LINE_CARD  removed 
    *Jun 27 23:59:25 PDT: %OSPF-SW2-5-ADJCHG: Process 1, Nbr 10.253.0.3 on TenGigabitEthernet1/1/1 from FULL to DOWN, Neighbor Down: Interface down or detached
    *Jun 27 23:59:25 PDT: %LINEPROTO-SW2-5-UPDOWN: Line protocol on Interface Port-channel24, changed state to down
    *Jun 27 23:59:25 PDT: %LINK-SW2-3-UPDOWN: Interface Port-channel24, changed state to down
    *Jun 27 23:59:26 PDT: %OIR-SW2-6-INSREM: Switch 1 Physical Slot 1 - Module Type LINE_CARD  removed 
    *Jun 27 23:59:26 PDT: %LINK-SW2-3-UPDOWN: Interface Port-channel17, changed state to down
    *Jun 27 23:59:26 PDT: %PFREDUN-SW2-6-ACTIVE: Standby processor removed or reloaded, changing to Simplex mode
    *Jun 27 23:59:26 PDT: %OIR-SW2-6-INSREM: Switch 1 Physical Slot 2 - Module Type LINE_CARD  removed 
    *Jun 27 23:59:27 PDT: %LINK-SW2-3-UPDOWN: Interface TenGigabitEthernet1/5/14, changed state to down
    *Jun 27 23:59:27 PDT: %LINK-SW2-3-UPDOWN: Interface TenGigabitEthernet1/5/15, changed state to down
    *Jun 27 23:59:27 PDT: %LINK-SW2-3-UPDOWN: Interface TenGigabitEthernet1/5/16, changed state to down
    *Jun 27 23:59:27 PDT: %LINEPROTO-SW2-5-UPDOWN: Line protocol on Interface TenGigabitEthernet1/5/14, changed state to down
    *Jun 27 23:59:27 PDT: %LINEPROTO-SW2-5-UPDOWN: Line protocol on Interface TenGigabitEthernet1/5/16, changed state to down
    *Jun 27 23:59:27 PDT: %LINK-SW2-3-UPDOWN: Interface TenGigabitEthernet1/1/1, changed state to down
    *Jun 27 23:59:27 PDT: %LINK-SW2-3-UPDOWN: Interface TenGigabitEthernet1/1/2, changed state to down
    *Jun 27 23:59:27 PDT: %LINK-SW2-3-UPDOWN: Interface TenGigabitEthernet1/1/3, changed state to down
    *Jun 27 23:59:27 PDT: %LINEPROTO-SW2-5-UPDOWN: Line protocol on Interface TenGigabitEthernet1/1/1, changed state to down
    *Jun 27 23:59:27 PDT: %LINEPROTO-SW2-5-UPDOWN: Line protocol on Interface TenGigabitEthernet1/1/2, changed state to down
    *Jun 27 23:59:27 PDT: %LINEPROTO-SW2-5-UPDOWN: Line protocol on Interface TenGigabitEthernet1/1/3, changed state to down
    Press RETURN to get started!
    *Jun 28 07:03:33.421: %USBFLASH-SW2_STBY-5-CHANGE: bootdisk has been inserted!
    *Jun 28 07:03:53.297: %OIR-SW2_STBY-6-INSPS: Power supply inserted in slot 1
    *Jun 28 07:03:53.301: %C6KPWR-SW2_STBY-4-PSOK: power supply 1 turned on.
    *Jun 28 07:04:26.093: %FABRIC-SW2_STBY-5-FABRIC_MODULE_ACTIVE: The Switch Fabric Module in slot 5 became active.
    *Jun 28 07:04:48.497: %DIAG-SW2_STBY-6-RUN_MINIMUM: Switch 2 Module 5: Running Minimal Diagnostics...
    *Jun 28 07:04:48.497: %CONST_DIAG-SW2_STBY-6-DIAG_PORT_SKIPPED: Module 5 port 15 is skipped in TestLoopback due to: the port is used as a VSL link.
    *Jun 28 07:04:48.497: %CONST_DIAG-SW2_STBY-6-DIAG_PORT_SKIPPED: Module 5 port 16 is skipped in TestLoopback due to: the port is used as a VSL link.
    *Jun 28 07:04:55.049: %CONST_DIAG-SW2_STBY-6-DIAG_PORT_SKIPPED: Module 5 port 15 is skipped in TestFexModeLoopback due to: the port is used as a VSL link.
    *Jun 28 07:04:55.049: %CONST_DIAG-SW2_STBY-6-DIAG_PORT_SKIPPED: Module 5 port 16 is skipped in TestFexModeLoopback due to: the port is used as a VSL link.
    *Jun 28 07:05:00.165: %CONST_DIAG-SW2_STBY-6-DIAG_PORT_SKIPPED: Module 5 port 15 is skipped in TestL2CTSLoopback due to: the port is used as a VSL link.
    *Jun 28 07:05:00.165: %CONST_DIAG-SW2_STBY-6-DIAG_PORT_SKIPPED: Module 5 port 16 is skipped in TestL2CTSLoopback due to: the port is used as a VSL link.
    *Jun 28 07:05:06.049: %CONST_DIAG-SW2_STBY-6-DIAG_PORT_SKIPPED: Module 5 port 15 is skipped in TestL3CTSLoopback due to: the port is used as a VSL link.
    *Jun 28 07:05:06.049: %CONST_DIAG-SW2_STBY-6-DIAG_PORT_SKIPPED: Module 5 port 16 is skipped in TestL3CTSLoopback due to: the port is used as a VSL link.
    *Jun 28 07:05:23.309: %DIAG-SW2_STBY-6-DIAG_OK: Switch 2 Module 5: Passed Online Diagnostics
    *Jun 28 00:05:38 PDT: %SYS-SW2_STBY-6-CLOCKUPDATE: System clock has been updated from 00:05:38 PDT Sat Jun 28 2014 to 00:05:38 PDT Sat Jun 28 2014, configured from console by console.
    *Jun 28 00:05:38 PDT: %SYS-SW2_STBY-6-CLOCKUPDATE: System clock has been updated from 00:05:38 PDT Sat Jun 28 2014 to 00:05:38 PDT Sat Jun 28 2014, configured from console by console.
    *Jun 28 00:05:38 PDT: %SSH-SW2_STBY-5-DISABLED: SSH 2.0 has been disabled
    *Jun 28 00:05:54 PDT: %SYS-SW2_STBY-5-RESTART: System restarted --
    Cisco IOS Software, c6880x Software (c6880x-ADVENTERPRISEK9-M), Version 15.1(2)SY2, RELEASE SOFTWARE (fc3)
    Technical Support: http://www.cisco.com/techsupport
    Copyright (c) 1986-2014 by Cisco Systems, Inc.
    Compiled Wed 26-Feb-14 15:30 by prod_rel_team
    *Jun 28 00:05:54 PDT: %SSH-SW2_STBY-5-ENABLED: SSH 2.0 has been enabled
    *Jun 28 00:05:54 PDT: %SYS-SW2_STBY-3-LOGGER_FLUSHED: System was paused for 00:03:01 to ensure console debugging output.
    *Jun 28 00:05:56 PDT: %C6KENV-SW2_STBY-4-LOWER_SLOT_EMPTY: The lower adjacent slot of module 5 might be empty. Airdam must be installed in that slot to be NEBS compliant
    *Jun 28 00:07:36 PDT: %DIAG-SW2_STBY-6-RUN_MINIMUM: Switch 2 Module 1: Running Minimal Diagnostics...
    *Jun 28 00:07:37 PDT: %SYS-SW2_STBY-3-LOGGER_FLUSHED: System was paused for 00:01:29 to ensure console debugging output.
    *Jun 28 00:07:41 PDT: %DIAG-SW2_STBY-6-RUN_MINIMUM: Switch 2 Module 2: Running Minimal Diagnostics...
    *Jun 28 00:08:10 PDT: %DIAG-SW2_STBY-6-DIAG_OK: Switch 2 Module 1: Passed Online Diagnostics
    *Jun 28 00:08:22 PDT: %EC-SW2_STBY-5-CANNOT_BUNDLE2: Te2/1/10 is not compatible with Te1/2/10 and will be suspended (Operational flow control send of Te2/1/10 is off, Te1/2/10 is on)
    *Jun 28 00:08:31 PDT: %EC-SW2_STBY-5-COMPATIBLE: Te2/1/10 is compatible with port-channel members
    *Jun 28 00:08:45 PDT: %DIAG-SW2_STBY-6-DIAG_OK: Switch 2 Module 2: Passed Online Diagnostics
    *Jun 28 00:08:46 PDT: %C6KENV-SW2_STBY-4-HIGHER_SLOT_EMPTY: The higher adjacent slot of module 2 might be empty. Airdam must be installed in that slot to be NEBS compliant
    ELDC1C1-AG01-1 line 0 
    ************************ W A R N I N G ***************************
    * THIS IS A PRIVATE COMPUTER SYSTEM, AND FOR AUTHORIZED USE ONLY.*
    * THIS SYSTEM IS MONITORED, AND ANY UNAUTHORIZED USE MAY BE      *
    * SUBJECT TO CRIMINAL PROSECUTION.                               *
    * IF YOU ARE NOT AUTHORIZED, LOG OUT IMMEDIATELY!!!!!            *
    so according to the logs, it seems like the switch was reloaded or something of the nature but even the cisco tac said that it wasnt the case but couldnt determine whats causing it either.  Tac went through the config on the vss and has said that its configured correctly.
    Maybe someone else has experienced this issue or if someone can point out something that I can look at...  sorry for the very long post.
    thanks

    I suppose, we have the same problem. Only when Switch 1 is the active switch of the 6880-X VSS system, the connection to the FEX-stack breaks suddenly after running fine for some days and the FEX-stack (3 x 6800-IA) get only ready again when I reset the whole VSS-system, both VSS-switches and the FEX-stack.
    All access ports at the FEX can't connect to our infrastructure (DHCP,DNS...). The two connected TenG FEX-stack uplinks sometimes get down and sometimes only the uplink to the active parent switch get down. The SYST LED of FEX 1 lighting amber.
    When parent switch 2 is the active unit the issue never occured.
    6880-X running with 15.2(1)SY, 6800-IA running with 15.2(3)E.
    Cisco TAC is investigating that issue, but till now without any result.
    When the issue occurs, the recorded logging messages are:
    Syslog 6880-X
    Apr  7 07:42:43.182: %PLATFORM_RPC-3-MSG_THROTTLED: RPC Msg Dropped by throttle mechanism: type 3, class 21, max_msg 32, total throttled 1274 (FEX-101)
    Apr  7 07:45:43.181: %PLATFORM_RPC-3-MSG_THROTTLED: RPC Msg Dropped by throttle mechanism: type 3, class 21, max_msg 32, total throttled 1276 (FEX-101)
    Syslog 6800-IA:
    Apr  7 07:57:43.182: %PLATFORM_RPC-3-MSG_THROTTLED: RPC Msg Dropped by throttle mechanism: type 3, class 21, max_msg 32, total throttled 1284
    -Traceback= 5198C4z 21413F8z 1C3B35Cz 1C3C6FCz 1C3CA00z 2654CC0z 26509BCz
    Apr  7 08:00:43.181: %PLATFORM_RPC-3-MSG_THROTTLED: RPC Msg Dropped by throttle mechanism: type 3, class 21, max_msg 32, total throttled 1286
    -Traceback= 5198C4z 21413F8z 1C3B35Cz 1C3C6FCz 1C3CA00z 2654CC0z 26509BCz

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