"Content generation error. The article exceeds maximum file size limit"

We are building a single edition app for our univesity's literary and arts magazine and have no problem previewing it through the adobe viewer app, but when we try to create a folio so we can begin the App Store process, we keep getting this pesky error. It refuses to export a folio.
The links folder associated with the indesign file totals 474mb.
The folder containing all the Indesign files associated with the app is 537mb.
So how are we exceeding the 1gb file size?
Details:
115 pages within a single article (we converted from the print edition, rather than placing each piece into an article of toys own. Is that a problem?).
All images (about 50) are png files of under 1mb and the videos have been exported to mp4 (total 370mb of video--do we need to switch to streaming?)
Every page has a button linking back to the home screen. And at least one, and sometimes two, MSOs (to full-screen an image or to pop up the author's bio.
3 mp3 audio pieces are insignificant in size.
We removed extraneous states from the MSOs.
Our PNG files are sized to a maximum width of 2048px.
The .indd file itself is 58mb
No HTML overlays, but we do have 5 or 6 hyperlinks that launch the browser.
Any guesses why we are unable to generate a folio with this article?
Is there a way to audit our project to see what the problem is?
We've scoured these forums and applied the advice that seemed pertinent , so your patience and recommendations would be a great help.

Thanks to both of you for your replies.
We watched Adobe's tutorial videos and read the guides on Adobe's site before starting our project (a first app for our lit-mag), and never found the kind of overview that would have made the built-in functionality of the Folio system evident. Are there beginner videos you recommend we screen for the editorial board next year? It has been a great learning process for us this summer, but one involving many errors along the way.
It seems like it won't be difficult to break up the journal into "articles," but in order to make the TOC work correctly it really is a one piece to a page thing (none of our pieces extends beyond one screen because we used scrollable overlays). Do you think we'll run into trouble with 100+ articles in our folio?
Thanks again for taking the time to respond!
--Clamor

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