Creating Video with Multiple Audio Tracks?

Not sure if this is the right place to post this question but I figured its compression/video codec related so someone might have an idea...
I've used Handbrake in the past to rip a DVD with an audio commentary that allowed for multiple audio tracks that could be played back in iTunes/Quicktime (though not on the iPod Classic for some reason... perhaps someone knows the answer to this?)
I was just curious as to whether or not this was possible to do WITHOUT first making a DVD with an 2ndary track? I was hoping to record audio commentary for one of my shorts, and put it up on the web, but wanted to avoid the step of going to dvd first then ripping it.
is this achievable in compressor? do I need to use a third party app? thanks so much.

ehmjay wrote:
is there any app (be it from apple or a 3rd party tool) that will allow me to add a secondary audio track for switching in quicktime/iTunes? if so could you point me in the direction of it (or even instructions)
I'm afraid I'm unaware of anything - outside of HandBrake - that does encode a second track of audio. But I haven't exactly had my eyes open since I haven't needed to do this for a client yet.
handbrake mentinos that its able to rip secondary audio for use with iPod Classic/Apple TV... however so far it hasn't worked for me. Does this mean that while handbrake is doing it properly its just my iPod itself that's having the troubles (like I said that alt. audio is there in iTunes/Quicktime just not on the iPod itself)
I am pretty sure that the issue is that the software for iPod Classics - as is the case with AppleTV and, even, QT Player - which won't allow you to switch over to the other track. But I haven't had to work with the Classic in a while, perhaps there is a setting in Audio (or Video) that gives you the pop-up option you're seeking?

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