CS5 and Matrox RT.X2 very slow

Hi all,
We are running CS5 with video card Matrox RT.X2. The Premiere Pro versionis 5.0.3 (005 ( MC :218798))
The hardware we are running on is built by ourselves:
- CPU Intel XEON X5680
- GPU ATI FirePro V4800
- 128 GB OCZ IBIS
- Motherboard SuperMicro X8DAH
- 16 GB RAM
We are using this server for editing commercials and inserters for one sport tv channel.  We are loosing time because Premiere »acts« really strange. Whenever an operator clicks on File/Export he begins to wait for Premiere to open the Export Settings window. This takes about 5-10 minutes.
Then when modifying only one setting ( format for example ) Premiere again takes 5-10 minutes to aplly the change, etc. for every change.
When the daily task on the server is around 10 commercials the guy working on the server cannot complete his work in his shift, because he constantly waits on Premiere to respond - so it takes around 5-10 minutes "per click"
We already uninstalled and reinstalled...
Any ideas?
Thanks in advance

Magnus is correct - here's the relevant info lifted from the MXO release notes:
Adobe Media Encoder
¦ Note If you’re using Adobe Media Encoder with a Matrox MXO2 product that
has the Matrox MAX option, see also “Matrox MAX H.264 encoding (MAX
option)” on page 10.
• When you export a Matrox PAL sequence to MPEG2-2 DVD format using
Adobe Media Encoder, set the Field Order to Upper under Basic Video
Settings in the Export Settings dialog box. Otherwise, your export may
be blurry. (Ref# 51007)
• If you find that switching the export format in the Export Settings dialog
box sometimes takes a long time, such as when you switch from Microsoft
AVI to MPEG2-DVD, rename the SurCodeWrapper.vca file on your system
(for example, rename the file to SurCodeWrapper.vca.bak). This file is
usually installed by Adobe Premiere Pro in the following folders:
$ \Program Files\Adobe\Adobe Premiere Pro CS5\MediaIO\codecs\
$ \Program Files\Adobe\Adobe Media Encoder CS5\MediaIO\codecs\
Be aware that after renaming the SurCodeWrapper.vca file, you won’t be able
to export audio to SwCode Dolby Digital, but you will still be able to export
audio to Dolby. (Ref# 55279 and Adobe Ref# 2603943

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       icudt40.dll   International Components for Unicode 2011/11/15-16:30:22    Build gtlib_3.0.16615  
       image_compiler.dll   AIF   3.0   62.490293
       image_flow.dll   AIF   3.0   62.490293
       image_runtime.dll   AIF   3.0   62.490293
       JP2KLib.dll   JP2KLib 2011/12/12-16:12:37   66.236923   66.236923
       libifcoremd.dll   Intel(r) Visual Fortran Compiler   10.0 (Update A)  
       libmmd.dll   Intel(r) C Compiler, Intel(r) C++ Compiler, Intel(r) Fortran Compiler   10.0  
       LogSession.dll   LogSession   2.1.2.1640  
       mediacoreif.dll   DVA Product   6.0.0  
       MPS.dll   MPS 2012/02/03-10:33:13   66.495174   66.495174
       msvcm80.dll   Microsoft® Visual Studio® 2005   8.00.50727.6195  
       msvcm90.dll   Microsoft® Visual Studio® 2008   9.00.30729.1  
       msvcp100.dll   Microsoft® Visual Studio® 2010   10.00.40219.1  
       msvcp80.dll   Microsoft® Visual Studio® 2005   8.00.50727.6195  
       msvcp90.dll   Microsoft® Visual Studio® 2008   9.00.30729.1  
       msvcr100.dll   Microsoft® Visual Studio® 2010   10.00.40219.1  
       msvcr80.dll   Microsoft® Visual Studio® 2005   8.00.50727.6195  
       msvcr90.dll   Microsoft® Visual Studio® 2008   9.00.30729.1  
       pdfsettings.dll   Adobe PDFSettings   1.04  
       Photoshop.dll   Adobe Photoshop CS6   CS6  
       Plugin.dll   Adobe Photoshop CS6   CS6  
       PlugPlug.dll   Adobe(R) CSXS PlugPlug Standard Dll (64 bit)   3.0.0.383  
       PSArt.dll   Adobe Photoshop CS6   CS6  
       PSViews.dll   Adobe Photoshop CS6   CS6  
       SCCore.dll   ScCore 2011/12/14-15:08:46   66.490082   66.490082
       ScriptUIFlex.dll   ScriptUIFlex 2011/12/14-15:08:46   66.490082   66.490082
       tbb.dll   Intel(R) Threading Building Blocks for Windows   3, 0, 2010, 0406  
       tbbmalloc.dll   Intel(R) Threading Building Blocks for Windows   3, 0, 2010, 0406  
       TfFontMgr.dll   FontMgr   9.3.0.113  
       TfKernel.dll   Kernel   9.3.0.113  
       TFKGEOM.dll   Kernel Geom   9.3.0.113  
       TFUGEOM.dll   Adobe, UGeom©   9.3.0.113  
       updaternotifications.dll   Adobe Updater Notifications Library   6.0.0.24 (BuildVersion: 1.0; BuildDate: BUILDDATETIME)   6.0.0.24
       WRServices.dll   WRServices Friday January 27 2012 13:22:12   Build 0.17112   0.17112
       wu3d.dll   U3D Writer   9.3.0.113  
    Required plug-ins:
       3D Studio 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Accented Edges 13.0
       Adaptive Wide Angle 13.0
       ADM 3.11x01
       Angled Strokes 13.0
       Average 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Bas Relief 13.0
       BMP 13.0
       Camera Raw 7.3
       Chalk & Charcoal 13.0
       Charcoal 13.0
       Chrome 13.0
       Cineon 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Clouds 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Collada 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Color Halftone 13.0
       Colored Pencil 13.0
       CompuServe GIF 13.0
       Conté Crayon 13.0
       Craquelure 13.0
       Crop and Straighten Photos 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Crop and Straighten Photos Filter 13.0
       Crosshatch 13.0
       Crystallize 13.0
       Cutout 13.0
       Dark Strokes 13.0
       De-Interlace 13.0
       Dicom 13.0
       Difference Clouds 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Diffuse Glow 13.0
       Displace 13.0
       Dry Brush 13.0
       Eazel Acquire 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Embed Watermark 4.0
       Entropy 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Extrude 13.0
       FastCore Routines 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Fibers 13.0
       Film Grain 13.0
       Filter Gallery 13.0
       Flash 3D 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Fresco 13.0
       Glass 13.0
       Glowing Edges 13.0
       Google Earth 4 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Grain 13.0
       Graphic Pen 13.0
       Halftone Pattern 13.0
       HDRMergeUI 13.0
       IFF Format 13.0
       Ink Outlines 13.0
       JPEG 2000 13.0
       Kurtosis 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Lens Blur 13.0
       Lens Correction 13.0
       Lens Flare 13.0
       Liquify 13.0
       Matlab Operation 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Maximum 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Mean 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Measurement Core 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Median 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Mezzotint 13.0
       Minimum 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       MMXCore Routines 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Mosaic Tiles 13.0
       Multiprocessor Support 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Neon Glow 13.0
       Note Paper 13.0
       NTSC Colors 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Ocean Ripple 13.0
       Oil Paint 13.0
       OpenEXR 13.0
       Paint Daubs 13.0
       Palette Knife 13.0
       Patchwork 13.0
       Paths to Illustrator 13.0
       PCX 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Photocopy 13.0
       Photoshop 3D Engine 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Picture Package Filter 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Pinch 13.0
       Pixar 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Plaster 13.0
       Plastic Wrap 13.0
       PNG 13.0
       Pointillize 13.0
       Polar Coordinates 13.0
       Portable Bit Map 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Poster Edges 13.0
       Radial Blur 13.0
       Radiance 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Range 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Read Watermark 4.0
       Reticulation 13.0
       Ripple 13.0
       Rough Pastels 13.0
       Save for Web 13.0
       ScriptingSupport 13.0.1
       Shear 13.0
       Skewness 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Smart Blur 13.0
       Smudge Stick 13.0
       Solarize 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Spatter 13.0
       Spherize 13.0
       Sponge 13.0
       Sprayed Strokes 13.0
       Stained Glass 13.0
       Stamp 13.0
       Standard Deviation 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Sumi-e 13.0
       Summation 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Targa 13.0
       Texturizer 13.0
       Tiles 13.0
       Torn Edges 13.0
       Twirl 13.0
       U3D 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Underpainting 13.0
       Vanishing Point 13.0
       Variance 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Variations 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Water Paper 13.0
       Watercolor 13.0
       Wave 13.0
       Wavefront|OBJ 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       WIA Support 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       Wind 13.0
       Wireless Bitmap 13.0.1 (13.0.1 20120808.r.519 2012/08/08:21:00:00)
       ZigZag 13.0
    Optional and third party plug-ins: NONE
    Plug-ins that failed to load: NONE
    Flash:
       Mini Bridge
       Extensis
       Kuler
    Installed TWAIN devices: NONE

    My Old System was:
    Dell T5500
    GPU1: ATI FirePro 5700
    GPU2: Nvidia Geforce 210
    CPU1:Xeon E5520 2.26Ghz
    CPU2:  Xeon E5520 2.26Ghz
    C Drive: 80gb Sata 10K RPM
    D Drive/Scratch Disk: 80gb Sata 10K RPM
    Photoshop CS6 was set at default performance setting with the exception of the D drive being used for the scratch disk. GPU Processor was checked.
    Worked on numerous large files 100 mg plus with little to no issue. Most setup in CMYK, 200 dpi, 8 bit depth.
    New Machine:
    Dell T5600
    Two ATI FirePro V5900
    CPU1: Xeon E5-2630
    CPU2: Xeon E5-2630
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    My Old System was:
    Dell T5500
    GPU1: ATI FirePro 5700
    GPU2: Nvidia Geforce 210
    CPU1:Xeon E5520 2.26Ghz
    CPU2:  Xeon E5520 2.26Ghz
    C Drive: 80gb Sata 10K RPM
    D Drive/Scratch Disk: 80gb Sata 10K RPM
    Photoshop CS6 was set at default performance setting with the exception of the D drive being used for the scratch disk. GPU Processor was checked.
    Worked on numerous large files 100 mg plus with little to no issue. Most setup in CMYK, 200 dpi, 8 bit depth.
    New Machine:
    Dell T5600
    Two ATI FirePro V5900
    CPU1: Xeon E5-2630
    CPU2: Xeon E5-2630
    C Drive: 240 gb SSD
    D Drive: 240gb SSD
    Tried Photoshop at all sorts of various settings including default. All with the D drive being used for the Scratch disk. Working on the similar size file described above. The file I am working on now is 4000 x 4800 pixels, CMYK, 8 bit depth.  Photoshop is slow selecting layers with auto select, very slow when moving layers around the Canvas, and slow rendering the Canvas when zooming in and out. This document also has about  30 layers and is 80mg.
    I only use the 64 bit version of Photoshop these days. Also all three monitors are set at 60 Hertz. Photoshop is closed and reopened upon all changes.
    I use to be a Photoshop Certified Expert in CS3 so I am extremely familar with the product. I am just stumped.

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