Customer as Vendor --while making payment f110 how to deduct line item wise

Dear all ,
My Requirement like this please help me come out this issue.
we have 5 company code , we have created customer as a vendor.In one company code ,for eg(10000 is a customer and mean time same as Customer as  Vendor(10000) in another company code.
Now we have raised customer invoice ,
For eg   10000 for fertilizer.
              10000 for Drip irrigation
              20000  some loan.
These transaction incurred in one company code.
In other company code these customer as a vendor ,
Here we have enter Vendor invoice,
For ex Invoice amount is 70000.
while making payment i want to deduct this amount from customer invoice amount.
like in 10000 for Fertilizer in that ,I want to deduct partial  amount in line item level  for different purpose.
How to deduct this amount .and how to map this scenario in the system.
Please guide me come out of this issue.
Thanks in advance
Regards
Girish.

Hi
vendor and same as a customer functionally is possible with in one company code.  in that case you will be able to clear the customer open items when you are doing the vendor payment.  
but in my knowledge this functionally is not possible with other company codes. as per your query you are maintained the vendor in one company code and customer in another company code.  you want to clear the line items with one transaction in F110.
i think its not possible.  becuase payments and receivables are with in company code.  
Regards
Ram

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