Document "Check In" fails

Hi All,
I need your help.
My use case is to edit a document locally which fails.
In detail:
   After pressing Edit locally the file opens in the right application.
   Then I change some entries in the document, save it and want to check in the doc.
   After a while the checkin fails and I get the error message:
   "A communication error occurred. "QAlerts.xls" could not be uploaded"
I must say its not an typically document, its an Excel file with more than 50 MB.
In the error log you can read about timeout.
So checked the configuration for example the Http Provider Service, but in my mind all looks good.
Im glad for any other ideas.
Many thanks
Steve

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