.eml files in finder (from received e-mails)

I spent most of Easter Sunday at my Mother-In-Law's house trying to figure this out. She claims that several attachments that have been previously received and could be opened- are now not accessable. I checked finder and there are in fact about 20 files- all marked with a blacked out box and with an '.eml extension. They are all photos- I would assume they were originally .jpg extensions.
Any ideas how this could happen? Any solutions to make these files open in iPhoto? Is this some sort of virus or worm? Know that is not too common in os x- but! Any help would be appreciated. Thanks, Doug

In most situations there are safer and more convenient ways to access the image files in the Aperture library thanopening the library itself, see Terence Devlin's User Tip with the summary:
How do I access my Photos in Aperture?
Particularly, if you need to access the library from the Finder using any File Chooser dialoge, you can browse the library from the "Photos" item in the Sidebar, for example in Preview:

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I can do it one by one by opening a single .eml file in Mail and moving it to the mailbox: Message menu -> Move To -> [Mailbox]
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I have a slight problem with e-mail attachments. It's quite an explanation, so stick with me please.
I have to extend, debug and adapt an e-mail archive for my company.
I already worked on this project for 2 months, to make an extra batch and change some functionality of the existing e-mail archive.
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Hi there,
Thanks for your reply.
Well, it was kind of a mistake in the webapplication itself. The object passed to the related method was an instance of MimeMessage (the previous programmer only checked MimeMultiParts), and those weren't added to the vector of attachments. Now they are.
But now i still have problems. I have to give those attachments a file name. I tried extracting the subject from the message, but in the related method the message is casted to a multipart (is needed for further processing), and i can't fetch the sub-message's subject (if i get the part, i can't get the subject header anymore).
If i don't give the file a .eml extension, it opens a MHTML file or something, and it is unreadable by windows. If i get an InputStream of the part's content, and return that, and give the attachment a .eml extension, i get the outlook window , but all the text is pure HTML code. Not like it should be, and the mail in Outlook doesn't have any headers (no from, no to, no subject, ...)
Any idea here ? I could suply you with some code, but i don't understand all the steps myself, i got on this project which was build by someone else. It's quite a lot of code.
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.eml files in finder (from received e-mails)

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