Error publishing "Application with runtime embedded" file

I am trying to publish an "Application with runtime embedded" file out of Flash Pro CC. I am getting an error that I think indicates that certain necessary files that get packaged with the SWF to create the App are not able to be copied. The error message occurs at the end of the process after the SWF file has been published and after it has tried to gather the AIR files.
iMac 27" 3.4 GHz Intel Core i7, 8 processor cores,  32gb ram,  OS X 10.8.4
Flash Pro CC Ver. 13.0.0.759 (up to date)
Error Message
Unknown error.
unexpected failure: Copy failed
java.io.IOException: Copy failed
at
com.adobe.air.nai.MacPackager.copyWithPermissions
(MacPackager.java:54)
at
com.adobe.air.nai.AppBundlePackager.assembleInternalFiles(AppBundlePackager.java:52)
at
com.adobe.air.nai.Native Packager.createPackage(NativePackager.java:132}
at
com.adobe.air.ADT.parseArgsAndGo(ADT.java:572)
at com.adobe.air.ADT.run(ADT.java:419)
at com.adobe.air.ADT.main(ADT.java:469)
I can publish the exact same file as an AIR package and have it work.
I have repaired my permissions in the off chance that Flash could not access the files due to bad permissions. 
I don't what my next steps should be. My chat with support netted nothing but the suggestion I post to this forum. Anyone have any ideas?
Thanks in advance

Hi,
Please let us know, which Player Target you are trying to publish to : AIR for Desktop/AIR for Android.
Are you trying to use AIR3.6 or any other SDK using Manage AIR SDK?
If possible, provide the scenario file so that we can repro the issue.
Regards,
Meenakshi

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    </persistence-store-descriptor>
    </weblogic-deployment-params>
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    import it.sella.ejb.EntityBeanAdapter;
    import java.util.ResourceBundle;
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    public Long soggettoId;
    public Long compatibleInstanceId;
    public Long compatibleTypeId;
    public Long rightPk;
    private Long codiciFisicaliId;
    public String value;
    private static ResourceBundle res;
    private static final String JNDI_FACTORY;
    private static final String WL_HOST_URL;
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    protected Long getCounterInitVal()
    return new Long(1000L);
    public Long getInstanceId()
    return compatibleInstanceId;
    public Long getRightPk()
    return rightPk;
    public Long getSoggettoId()
    return soggettoId;
    public Long getTypeId()
    return compatibleTypeId;
    public String getValue()
    return value;
    public void setInstanceId(Long long1)
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    setModified(true);
    public void setRightPk(Long long1)
    rightPk = long1;
    setModified(true);
    public void setSoggettoId(Long long1)
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    setModified(true);
    public void setTypeId(Long long1)
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    setModified(true);
    public void setValue(String s)
    value = s;
    setModified(true);
    static
    res = ResourceBundle.getBundle("EJBFrameWorkLogRes");
    JNDI_FACTORY = res.getString("WLInitialContexFactoryNameForJNDI");
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    // IPrimaryKey
    public class DefaultPK
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    public Long id;
    public DefaultPK()
    public DefaultPK(Long id)
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    public Long getId()
    return id;
    protected void setId(Long id)
    this.id = id;
    public String toString()
    return "Id=" + getId();
    public int hashCode()
    return getId() == null ? 0 : getId().hashCode();
    public boolean equals(Object obj)
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    else
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    public java.lang.Object findByPrimaryKey(it.sella.dispatch.TopicListenerPK topiclistenerpk)
    ^
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    <small-icon>it/sella/dispatch/postman-small.gif</small-icon>
    <large-icon>it/sella/dispatch/postman.gif</large-icon>
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         <small-icon></small-icon>
         <large-icon></large-icon>
         <ejb-name>it.sella.dispatch.TopicManager</ejb-name>
         <home>it.sella.dispatch.TopicManagerHome</home>
         <remote>it.sella.dispatch.TopicManager</remote>
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         <transaction-type>Container</transaction-type>
         <env-entry>
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         <env-entry-name>SelectStatement</env-entry-name>
         <env-entry-type>java.lang.String</env-entry-type>
         <env-entry-value>select distinct topicname from tbltopics</env-entry-value>
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         <env-entry>
         <description>The name of the field to select from</description>
         <env-entry-name>TopicFieldName</env-entry-name>
         <env-entry-type>java.lang.String</env-entry-type>
         <env-entry-value>TOPICNAME</env-entry-value>
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         <env-entry>
         <description>The password for oracle DB Connection</description>
         <env-entry-name>Password</env-entry-name>
         <env-entry-type>java.lang.String</env-entry-type>
         <env-entry-value>ssil</env-entry-value>
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         <env-entry>
         <description>The Driver class name for the Oracle DB</description>
         <env-entry-name>JDBCDriver</env-entry-name>
         <env-entry-type>java.lang.String</env-entry-type>
         <env-entry-value>oracle.jdbc.driver.OracleDriver</env-entry-value>
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         <env-entry>
         <description>The driver URL for the database</description>
         <env-entry-name>JDBCURL</env-entry-name>
         <env-entry-type>java.lang.String</env-entry-type>
         <env-entry-value>jdbc:oracle:thin:@171.97.1.5:1521:th2o</env-entry-value>
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         <env-entry>
         <description>The user name used to connect to the Oracle DB</description>
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         <env-entry-type>java.lang.String</env-entry-type>
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    <session>
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         <small-icon></small-icon>
         <large-icon></large-icon>
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         <ejb-name>it.sella.dispatch.TopicListener</ejb-name>
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