Got the Trojan.Zbot before the antivirus kicked in. All previous emails show that they are there but can't see the contents. Can they be restored?

All old emails are showing that they are there but there are no contents when you try to open them.

right click the folder, select properties and then the repair button. A new index will be generated which may fix the issue or make the empty mails disappear because they are no longer available to be indexed.
BTW look in your anti virus program for quarantined files with names like inbox

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    In your calendars app, click the calendars button below and check if all the calendars are selected. Also click the search button on top(magnifying glass) and see if the events are listed.

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    Welcome to the Apple Community Diane.
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    That is correct.
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