How do I delete Photo Stream photos that are taking up hard drive space in my Masters folder, but not actually appearing in any event, or on the interface at all?

A couple months ago, I activated photo stream using my apple ID. I was under the impression that all the photos uploaded to my photo stream would only use server space on icloud and wouldn't actually utilize disk space, or at the most, the option was available to only download specific photos to my hard drive. My hope was that I could upload the photos to a specific drive, and view the uploaded thumbs or low-res comps on any device as a reference.
This is not the case.
What I have found is that iphoto has been automatically downloading any and all photos uploaded to my photo stream. Not just the thumbnails, the entire thumbnail + all resolutions. I shoot RAW photos so in my case, the original averages about 15-25MB per photo.
I have been uploading directly to an iphoto library on an external hard drive specifically designated for handling all my RAW high-res images.
What has been happening is all those RAW files are also being uploaded directly to my iphoto library on my iMac and eating up memory which I cannot reclaim, even after deactivating my Photo Stream in preferences. We're talking almost 100 GB of memory is tied up right now.
I don't want to just go in and start deleting files and folders in my Masters folder, since I have heard this will break iphoto, but the photos in my photostream do not show up in any event and I need to reclaim the hard drive space.
How can I safely delete them?

If the files are loose inside the iPhoto library package here's one way to get them out:
1 - open your library, select all of the photos in the library and add a unique keyword, XXXX,  to all of them.
2 - Rebuild the library with  iPhoto Library Manager  as follows:
Using iPhoto Library Manager  to Rebuild Your iPhoto Library
1 - download iPhoto Library Manager and launch.>Click on the Add Library button,
2 -  select the library you want to add from those in the selection window.
3 - make sure that in the rebuild window the checkbox  "Scavange orphaned photos" is checked.
4 - now that the library is listed in the left hand pane of iPLM, click on your library and go to the Library ➙ Rebuild Library menu option
5 - in the next  window name the new library and select the location you want it to be placed. Click on the Create button.
Note 1: This creates a new library based on the LIbraryData.xml file in the library and will recover Events, Albums, keywords, titles and comments. However, books, calendars, cards and slideshows will be lost.
Note 2:  Your current library will be left untouched for further attempts at a fix if so desired.
3 - open the library, create a smart album with the criterial "Keyword is not XXXX".
4 - the smart album will include those photos that were not visible in your original library. Select them and use the key combination of Command+Option+Delete to move them to the iPhoto Trash bin.
5 - empty the iPhoto Trash bin via the iPhoto ➙ Empty iPhoto Trash Bin menu option.
6 - empty the Trash bin in the Dock to remove the files from your hard drive completely.
Be sure to read Note 1 above.  You can use the new library without your books, slideshow, etc. and it will not  contain those errant files.  Of course delete the original library if the new one is satisfactory.

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