How to set security group as primary site collection admin and secondary site collection admin using powershell in sharepoint online site - office 365?

Hi,
According to your description, my understanding is that you want to set security group as admin of primary and secondary site collection using PowerShell command in office 365.
I suggest you can use the command below to set the group to site owner, then it will have the site collection admin permission.
Set-SPOSite -Identity https://contoso.sharepoint.com/sites/site1 -Owner [email protected] -NoWait
Here are some detailed articles for your reference:
https://technet.microsoft.com/en-us/library/fp161394(v=office.15)
http://blogs.realdolmen.com/experts/2013/08/16/managing-sharepoint-online-with-powershell/
Thanks
Best Regards
Jerry Guo
TechNet Community Support

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According to your post, my understanding is that you wanted to add a list and a lookup column in about 200 identical sites.
Per my knowledge, there is no out of the box way to achieve it in SharePoint Server, however, I’m not sure whether it is in SharePoint online.
As this is the forum for SharePoint Server, you can post your question in the forum for SharePoint online.
http://community.office365.com/en-us/forums/154.aspx.
However, as you had known, we can achieve it programmatically.
Besides the PowerShell command, we can also use the Client Object Model to achieve your scenario.
If all the 200 sites in one site collection, we can first retrieve all the sites in the site collection, then add the list in every site.
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static void Main(string[] args)
getSubWebs(mainpath);
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try
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getSubWebs(newpath);
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catch (Exception ex)
http://chennaisharepointtraining.blogspot.in/2011/11/get-all-subwebs-using-client-object.html
To create a list, you can have a look at the following article.
http://msdn.microsoft.com/en-us/library/office/fp179912(v=office.15).aspx
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