How to transfer new applications from the iphone to itunes?

When I want to update the IOS to 7 Itunes I get an Itunes warning "There are new bought apps in the Iphone that hasn't been transfered to Itunes" ,
How do I transfer the apps to Itunes?. All the apps are updated in both the Iphone and Itunes.

Thanks very much.  First valid answer I've gotten despite my posts on LinkedIn and Facebook, totalling over 8000 "friend"-connections.
BUT, is this really the best program?  I heard about "Senuti", and another one at Apple called Files Transfer... 
I have no problem paying for which ever program does the job, but in todays world, it seems only 2% of all programs work, or does what it actualy says. 
AND, how does this program you suggest, actually interact with iTunes, and MacBook?  In the future once all music is finally tranferred, do I get all the same folder, and order, which I've spend many many many hours setting up on my prvious iTunes...
Thanks a lot.

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