IE 11: Javascript files are not loaded correctly from cache?

Since installing Windows 8.1, I have been experiencing issues with script loading in IE 11: When the server responds with "304 Not Modified" in response to a script request, bad things happen. Specifically, I encounter script errors that would
normally be caused by a missing script reference or having references in the wrong order (e.g. "Unable to get property 'foo' of undefined or null reference"). Doing a force-refresh (i.e. Ctrl+F5) corrects the issue until the next page load.
Based on what I see in the IE 11 developer tools, it looks like the scripts are loaded correctly. I can open them in the Debugger view and the content appears to be correct. Perhaps IE is just not loading them in the correct order in this scenario?
I noticed this problem myself and then someone else (who has also recently installed Windows 8.1) informed me that it appears he is experiencing exactly the same issue on a different site.

I'm fairly certain this issue represents a bug in IE 11. The same problem(s) do not occur in IE 9 or IE 10. The same problems occur on unrelated websites accessed from separate machines. Doing a force-refresh (Ctrl+F5) always fixes the issue.
I took your advice about opening the console to look for error messages during page load. When loading normally (i.e. not doing a force-refresh), the console shows the following:
HTML1300: Navigation occurred.
File: TimeEntry
DOM7011: The code on this page disabled back and forward caching. For more information, see: http://go.microsoft.com/fwlink/?LinkID=291337
File: Dashboard
SCRIPT70: Permission denied
File: modernizr-2.5.3.js, Line: 468, Column: 9
SCRIPT70: Permission denied
File: jquery-ui-1.10.0.js, Line: 252, Column: 1
SCRIPT70: Permission denied
File: knockout-2.2.1.js, Line: 48, Column: 5
SCRIPT5007: Unable to get property 'extend' of undefined or null reference
File: knockout.validation.js, Line: 30, Column: 5
When loading the page via a force-refresh, only the 'Navigation occurred.' message is displayed. It does not make sense that IE would apply a more restrictive security policy to scripts loaded from cache vs. scripts loaded directly from their original location,
yet that appears to be what is happening.
Post questions about html, css and scripting for website development to the IE Web Development forum.....WITH A LINK TO YOUR WEBSITE OR A MASHUP THAT SHOWS THE ISSUE...
looks like you have a sandboxed iframe on your page.
the first step in troubleshooting IE issues is to test in noAddons mode.
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