Mac Pro - Boot drive - Read & Write speed differences

Hi
My Mac Pro came with a 500GB boot drive when I ordered it 3 years ago.  It has been used most days and now runs
Snow Leopard (for scanners and a canopus video box that don't work with Lion) and Lion. 
I did a write & write test on the drive recently at both were approx 60 - 65 MB/s.  I have another drive in my machine
I bought last month, replacing an WD drive that failed in less than 18 months.  This new drive (complete same as replacement
is a WD Caviar (Black) 1TB 64Mb drive. 
This drive tests at speeds for 110MB/s.  This may seem an obvious question, but will I notice much difference if I swap the drives
around and have the newer drive as my boot drive. 
Also, does having two OS on a HD slow the drive down also?
Thanks in advance
Matt

Use the 500 for a system backup clone then.
If you want to and have $150 then I recommend this for the system actually (you don't need 1TB and even if you did use a 1TB which are now $120, I would 'short stroke' and use just 1/3 to 1/2  for the system anyway.
Western Digital WD2500HHTZ 250gb Sata 6gb/s 3.5 Hd
http://www.amazon.com/gp/product/B007V5A1BK/
check reviews of the new WD 10K VR ~200MB/sec

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