Missing .xml files

As part of something identified by the FBI as a scam (called "Reveton"), I had my Safari page temporarily frozen (apparenly simply by substituting their selected page as my home page), and with a good deal of "hoop-jumping" to "unfreeze" my computer with the help of both ISP and Apple tech support, I am once again able to use Safari and other stuff seems restored as well, but I find my "Pages" documents can be read or accessed because they are missing their ".xml files". This apparently pertains only to those files , upgraded or not, which appear on my desktop without being in folder whether or not I've upgraded them to the new Mavericks status from the recent upgrade. I can create new documents without a problem.  This is an "advertisement" for using the new coud tool for automatic update, or somethign like it, which I do not ordinarily do. (Guess I'm gonna have to change my ways....)
Any ideas for a remedy or method of recovery, or do I just chalk this one up under the phrase "learning curve"?

The Pages and missing .xml files seem to have restored themselves, probably when I shut off the lovely thing when I went to dinner.  I can open the files that I could not open before. I've heard that these things clean and heal themselves; I think I just saw it in action.

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