My brand new mac mini is super slow

Dear Apple people of the world,
I just bought a new entry-level Mac Mini to supplement by 2010 Apple Air. It's the basic model (2.5 GHZ Dual Core Intel core i5, 4gb memory, 500 gb hard drive, intel hd graphics 4000, os x mavericks). As soon as I got it I upgraded to os X 10.9.5 and migrated data from my Apple Air onto the Mac Mini, so that the hard drive is about half full with word and pdf documents. I also installed Chrome, Evernote, Dropbox and a few other apps.
Problem: The Mac Mini is absurdly slow. Even if I have all apps and windows closed except for one or two, it takes forever to open new apps, sometimes iTunes takes a minute or two to launch, sometimes things freeze, and so on. I can't figure out why it's so slow. Loading emails, reading emails, composing emails, all takes place with significant lag. And if I have more than a few apps open, forget about it, I may as well make a coffee while I try to open a new program.
Any idea why this might be the case? Anything I can do to fix it? The problem is complicated by the fact that I bought it last week in the USA and am now in Gwrmany, so I can't easily exchange or return or upgrade it.

EtreCheck version: 2.0.1 (82)
Report generated October 10, 2014 at 6:02:59 PM GMT+2
Hardware Information: ℹ️
  Mac mini (Late 2012) (Verified)
  Mac mini - model: Macmini6,1
  1 2.5 GHz Intel Core i5 CPU: 2-core
  4 GB RAM Upgradeable
  BANK 0/DIMM0
  2 GB DDR3 1600 MHz ok
  BANK 1/DIMM0
  2 GB DDR3 1600 MHz ok
  Bluetooth: Good - Handoff supported
  Wireless:  en1: 802.11 a/b/g/n
Video Information: ℹ️
  Intel HD Graphics 4000 -
  DELL U2412M 1920 x 1200
System Software: ℹ️
  OS X 10.9.5 (13F34) - Uptime: one day 6:16:15
Disk Information: ℹ️
  APPLE HDD HTS545050A7E362 disk0 : (500.11 GB)
  S.M.A.R.T. Status: Verified
  EFI (disk0s1) <not mounted> : 210 MB
  Super 9 (disk0s2) /  [Startup]: 499.25 GB (256.37 GB free)
  Recovery HD (disk0s3) <not mounted>  [Recovery]: 650 MB
USB Information: ℹ️
  Western Digital My Book 1230 3 TB
  S.M.A.R.T. Status: Verified
  EFI (disk2s1) <not mounted> : 315 MB
  Rescued (disk2s2) <not mounted> : 142.00 GB
  Archives External (disk2s3) <not mounted> : 147.00 GB
  Mac Clon (disk2s4) <not mounted> : 251.00 GB
  Photos Clon (disk2s5) <not mounted> : 260.00 GB
  Archives Ext BACKUP (disk2s6) <not mounted> : 150.00 GB
  Music Clon (disk2s7) <not mounted> : 400.00 GB
  Video Clon (disk2s8) <not mounted> : 350.00 GB
  Home Time Machine (disk2s9) <not mounted> : 1 TB
  Kingston DataTraveler 2.0 30.94 GB
  S.M.A.R.T. Status: Verified
  Cybernathrope (disk4s1) /Volumes/Cybernathrope : 30.94 GB (14.72 GB free)
  Apple Inc. iPod
  LaCie LaCie Device 500.11 GB
  S.M.A.R.T. Status: Verified
  EFI (disk1s1) <not mounted> : 210 MB
  bernieTunes (disk1s2) /Volumes/bernieTunes : 499.76 GB (292.87 GB free)
  Apple Inc. BRCM20702 Hub
  Apple Inc. Bluetooth USB Host Controller
  Apple, Inc. IR Receiver
Thunderbolt Information: ℹ️
  Apple Inc. thunderbolt_bus
Gatekeeper: ℹ️
  Mac App Store and identified developers
Kernel Extensions: ℹ️
  /Library/Extensions
  [loaded] com.sophos.kext.sav (9.1.55 - SDK 10.7) Support
  [loaded] com.sophos.nke.swi (9.1.50 - SDK 10.8) Support
  /System/Library/Extensions
  [loaded] com.Perfect.Driver.SystemAudioRecorder (1.0.0 - SDK 10.6) Support
  [not loaded] com.cisco.nke.ipsec (2.0.1) Support
  [not loaded] com.devguru.driver.SamsungComposite (1.4.20 - SDK 10.6) Support
  /System/Library/Extensions/ssuddrv.kext/Contents/PlugIns
  [not loaded] com.devguru.driver.SamsungACMControl (1.4.20 - SDK 10.6) Support
  [not loaded] com.devguru.driver.SamsungACMData (1.4.20 - SDK 10.6) Support
  [not loaded] com.devguru.driver.SamsungMTP (1.4.20 - SDK 10.5) Support
  [not loaded] com.devguru.driver.SamsungSerial (1.4.20 - SDK 10.6) Support
Startup Items: ℹ️
  CiscoVPN: Path: /System/Library/StartupItems/CiscoVPN
  Startup items are obsolete and will not work in future versions of OS X
Problem System Launch Daemons: ℹ️
  [failed] com.apple.wdhelper.plist
Launch Agents: ℹ️
  [not loaded] com.adobe.AAM.Updater-1.0.plist Support
  [loaded] com.adobe.AdobeCreativeCloud.plist Support
  [loaded] com.google.keystone.agent.plist Support
  [running] com.sophos.uiserver.plist Support
Launch Daemons: ℹ️
  [loaded] com.adobe.fpsaud.plist Support
  [loaded] com.barebones.authd.plist Support
  [loaded] com.google.keystone.daemon.plist Support
  [loaded] com.microsoft.office.licensing.helper.plist Support
  [loaded] com.rogueamoeba.instanton-agent.plist Support
  [running] com.sophos.autoupdate.plist Support
  [running] com.sophos.configuration.plist Support
  [running] com.sophos.intercheck.plist Support
  [running] com.sophos.notification.plist Support
  [running] com.sophos.scan.plist Support
  [running] com.sophos.sxld.plist Support
  [running] com.sophos.webd.plist Support
  [loaded] com.tunnelbear.mac.tbeard.plist Support
User Launch Agents: ℹ️
  [loaded] com.adobe.ARM.[...].plist Support
  [running] com.spotify.webhelper.plist Support
User Login Items: ℹ️
  CultureInfo UNKNOWN (missing value)
  Google Drive UNKNOWN (missing value)
  Dropbox Application (/Applications/Dropbox.app)
  Google Chrome ApplicationHidden (/Applications/Google Chrome.app)
  fuspredownloader UNKNOWNHidden (missing value)
  Rogue Amoeba Schedule Helper ApplicationHidden (/Library/Application Support/Audio Hijack Pro/Rogue Amoeba Schedule Helper.app)
  Day-O Application (/Applications/Downloaded and Installed/Day-O/Day-O.app)
  KiesAgent ApplicationHidden (/Applications/Kies.app/Contents/MacOS/KiesAgent.app)
  EvernoteHelper Application (/Applications/Evernote.app/Contents/Library/LoginItems/EvernoteHelper.app)
Internet Plug-ins: ℹ️
  MeetingJoinPlugin: Version: (null) - SDK 10.6 Support
  nplastpass: Version: 2.5.5 Support
  o1dbrowserplugin: Version: 5.4.2.18903 Support
  Unity Web Player: Version: UnityPlayer version 3.5.1f2 - SDK 10.6 Support
  Default Browser: Version: 537 - SDK 10.9
  PrintDialogExt: Version: 6.1.1 Support
  net.juniper.DSSafariExtensions: Version: (null) Support
  AdobeAAMDetect: Version: AdobeAAMDetect 2.0.0.0 - SDK 10.7 Support
  FlashPlayer-10.6: Version: 15.0.0.152 - SDK 10.6 Support
  AdobePDFViewerNPAPI: Version: 11.0.09 - SDK 10.6 Support
  Silverlight: Version: 5.1.30317.0 - SDK 10.6 Support
  Flash Player: Version: 15.0.0.152 - SDK 10.6 Support
  iPhotoPhotocast: Version: 7.0 - SDK 10.7
  googletalkbrowserplugin: Version: 5.4.2.18903 Support
  QuickTime Plugin: Version: 7.7.3
  AdobePDFViewer: Version: 11.0.09 - SDK 10.6 Support
  SharePointBrowserPlugin: Version: 14.3.0 - SDK 10.6 Support
  NPDjVu: Version: 6.1.1 Support
User Internet Plug-ins: ℹ️
  Picasa: Version: 1.0 Support
3rd Party Preference Panes: ℹ️
  Flash Player  Support
  Growl  Support
  MacFUSE  Support
Time Machine: ℹ️
  Skip System Files: NO
  Mobile backups: ON
  Auto backup: YES
  Volumes being backed up:
  Super 9: Disk size: 499.25 GB Disk used: 242.88 GB
  Destinations:
  Time Machine Office [Local]
  Total size: 999.34 GB
  Total number of backups: 13
  Oldest backup: 2014-08-19 18:05:05 +0000
  Last backup: 2014-09-19 14:30:15 +0000
  Size of backup disk: Adequate
  Backup size 999.34 GB > (Disk used 242.88 GB X 3)
  Untitled 1 [Local]
  Total size: 999.86 GB
  Total number of backups: 59
  Oldest backup: 2011-07-26 17:23:47 +0000
  Last backup: 2014-08-16 12:28:32 +0000
  Size of backup disk: Adequate
  Backup size 999.86 GB > (Disk used 242.88 GB X 3)
  Time Machine [Local]
  Total size: 1 TB
  Total number of backups: 83
  Oldest backup: 2011-07-26 17:23:47 +0000
  Last backup: 2014-10-08 17:12:11 +0000
  Size of backup disk: Adequate
  Backup size 1 TB > (Disk used 242.88 GB X 3)
Top Processes by CPU: ℹ️
      8% WindowServer
      6% Calendar
      2% Found
      2% Google Chrome
      1% Dock
Top Processes by Memory: ℹ️
  176 MB thunderbird
  86 MB Google Chrome
  86 MB GotFound
  82 MB Mail
  73 MB AdobeAcrobat
Virtual Memory Information: ℹ️
  254 MB Free RAM
  1.05 GB Active RAM
  1.04 GB Inactive RAM
  779 MB Wired RAM
  20.22 GB Page-ins
  2.18 GB Page-outs

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    I am experiencing ongoing Kernel Panics on a new Mac Mini (purchased in July 2012). Running Mountain Lion, 8 gig RAM (Apple Branded). What I've tried to fix it:
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    Reinstall of Mountain Lion
    Uninstalled various 3rd party software including: LogMeIn, PS3 Media Server, Fuse, NTFS+ (don't recall exact name), DVD Fab.
    Disconnected all external devices including External Hard Drives, DVD Drives, cameras etc.
    They keep coming, pretty much daily (often 2 or 3 a day).
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    Fri Dec 28 22:48:00 2012
    panic(cpu 2 caller 0xffffff800fc88aec): "VM_PAGE_QUEUES_REMOVE: unmarked page on Q"@/SourceCache/xnu/xnu-2050.18.24/osfmk/vm/vm_resident.c:2269
    Backtrace (CPU 2), Frame : Return Address
    0xffffff8100a4b590 : 0xffffff800fc1d626
    0xffffff8100a4b600 : 0xffffff800fc88aec
    0xffffff8100a4b630 : 0xffffff800fc76be6
    0xffffff8100a4b690 : 0xffffff800fc7be47
    0xffffff8100a4b6c0 : 0xffffff800fc75d34
    0xffffff8100a4b6f0 : 0xffffff800fc751c0
    0xffffff8100a4b730 : 0xffffff800fc91d21
    0xffffff8100a4b750 : 0xffffff800fc151ad
    0xffffff8100a4b780 : 0xffffff800fc20ced
    0xffffff8100a4b7a0 : 0xffffff800fc20b0c
    0xffffff8100a4b7d0 : 0xffffff800fc10448
    0xffffff8100a4b820 : 0xffffff800fc20df2
    0xffffff8100a4b850 : 0xffffff800fc4f021
    0xffffff8100a4b890 : 0xffffff8010051284
    0xffffff8100a4b8b0 : 0xffffff801004b2bd
    0xffffff8100a4b910 : 0xffffff7f91455150
    0xffffff8100a4b940 : 0xffffff7f91454eec
    0xffffff8100a4b990 : 0xffffff7f914539fa
    0xffffff8100a4b9b0 : 0xffffff7f914461d8
    0xffffff8100a4b9e0 : 0xffffff7f91478c4c
    0xffffff8100a4ba10 : 0xffffff7f914451b1
    0xffffff8100a4bb40 : 0xffffff7f914438b4
    0xffffff8100a4bba0 : 0xffffff8010065bc9
    0xffffff8100a4bbc0 : 0xffffff8010067170
    0xffffff8100a4bc20 : 0xffffff8010064b8f
    0xffffff8100a4bd70 : 0xffffff800fc981e1
    0xffffff8100a4be80 : 0xffffff800fc20aed
    0xffffff8100a4beb0 : 0xffffff800fc10448
    0xffffff8100a4bf00 : 0xffffff800fc1961b
    0xffffff8100a4bf70 : 0xffffff800fca5b16
    0xffffff8100a4bfb0 : 0xffffff800fcced53
          Kernel Extensions in backtrace:
             com.apple.driver.AppleIntelHD3000Graphics(8.0)[EAD976F9-7469-3F17-AB8E-6A039213 8DCB]@0xffffff7f91439000->0xffffff7f9149afff
                dependency: com.apple.iokit.IOPCIFamily(2.7.2)[B1B77B26-7984-302F-BA8E-544DD3D75E73]@0xffff ff7f902d0000
                dependency: com.apple.iokit.IONDRVSupport(2.3.5)[86DDB71C-A73A-3EBE-AC44-0BC9A38B9A44]@0xff ffff7f90830000
                dependency: com.apple.iokit.IOGraphicsFamily(2.3.5)[803496D0-ADAD-3ADB-B071-8A0A197DA53D]@0 xffffff7f907ed000
    BSD process name corresponding to current thread: WebProcess
    Mac OS version:
    12C60
    Kernel version:
    Darwin Kernel Version 12.2.0: Sat Aug 25 00:48:52 PDT 2012; root:xnu-2050.18.24~1/RELEASE_X86_64
    Kernel UUID: 69A5853F-375A-3EF4-9247-478FD0247333
    Kernel slide:     0x000000000fa00000
    Kernel text base: 0xffffff800fc00000
    System model name: Macmini5,1 (Mac-8ED6AF5B48C039E1)
    System uptime in nanoseconds: 28545333146015
    last loaded kext at 28078113488995: com.apple.iokit.SCSITaskUserClient          3.5.1 (addr 0xffffff7f9188d000, size 36864)
    last unloaded kext at 28149245229460: com.apple.driver.AppleUSBCDC          4.1.22 (addr 0xffffff7f9188a000, size 12288)
    loaded kexts:
    com.apple.iokit.SCSITaskUserClient          3.5.1
    com.apple.filesystems.exfat          1.3
    com.apple.filesystems.smbfs          1.8
    com.apple.filesystems.udf          2.3
    com.apple.driver.AppleHWSensor          1.9.5d0
    com.apple.driver.AudioAUUC          1.60
    com.apple.filesystems.autofs          3.0
    com.apple.driver.ApplePlatformEnabler          2.0.5d4
    com.apple.driver.AGPM          100.12.69
    com.apple.driver.AppleMikeyHIDDriver          122
    com.apple.driver.AppleMikeyDriver          2.3.1f2
    com.apple.iokit.BroadcomBluetoothHCIControllerUSBTransport          4.0.9f33
    com.apple.driver.AppleUpstreamUserClient          3.5.10
    com.apple.driver.AppleMCCSControl          1.0.33
    com.apple.driver.AppleHDA          2.3.1f2
    com.apple.driver.AppleSMCPDRC          1.0.0
    com.apple.driver.AppleLPC          1.6.0
    com.apple.iokit.IOUserEthernet          1.0.0d1
    com.apple.iokit.IOBluetoothSerialManager          4.0.9f33
    com.apple.Dont_Steal_Mac_OS_X          7.0.0
    com.apple.driver.ApplePolicyControl          3.2.11
    com.apple.driver.AppleIntelHD3000Graphics          8.0.0
    com.apple.driver.AppleIntelSNBGraphicsFB          8.0.0
    com.apple.driver.ACPI_SMC_PlatformPlugin          1.0.0
    com.apple.driver.AppleIRController          320.15
    com.apple.driver.XsanFilter          404
    com.apple.iokit.IOAHCIBlockStorage          2.2.2
    com.apple.AppleFSCompression.AppleFSCompressionTypeDataless          1.0.0d1
    com.apple.AppleFSCompression.AppleFSCompressionTypeZlib          1.0.0d1
    com.apple.BootCache          34
    com.apple.driver.AppleUSBHub          5.2.5
    com.apple.driver.AppleFWOHCI          4.9.6
    com.apple.driver.AirPort.Brcm4331          602.15.22
    com.apple.iokit.AppleBCM5701Ethernet          3.2.5b3
    com.apple.driver.AppleAHCIPort          2.4.1
    com.apple.driver.AppleSDXC          1.2.2
    com.apple.driver.AppleUSBEHCI          5.4.0
    com.apple.driver.AppleEFINVRAM          1.6.1
    com.apple.driver.AppleRTC          1.5
    com.apple.driver.AppleACPIButtons          1.6
    com.apple.driver.AppleHPET          1.7
    com.apple.driver.AppleSMBIOS          1.9
    com.apple.driver.AppleACPIEC          1.6
    com.apple.driver.AppleAPIC          1.6
    com.apple.driver.AppleIntelCPUPowerManagementClient          196.0.0
    com.apple.nke.applicationfirewall          4.0.39
    com.apple.security.quarantine          2
    com.apple.driver.AppleIntelCPUPowerManagement          196.0.0
    com.apple.iokit.IOSCSIBlockCommandsDevice          3.5.1
    com.apple.kext.triggers          1.0
    com.apple.iokit.AppleBluetoothHCIControllerUSBTransport          4.0.9f33
    com.apple.driver.DspFuncLib          2.3.1f2
    com.apple.iokit.IOAudioFamily          1.8.9fc10
    com.apple.kext.OSvKernDSPLib          1.6
    com.apple.driver.AppleSMBusController          1.0.10d0
    com.apple.iokit.IOFireWireIP          2.2.5
    com.apple.driver.AppleHDAController          2.3.1f2
    com.apple.iokit.IOHDAFamily          2.3.1f2
    com.apple.iokit.IOSurface          86.0.3
    com.apple.iokit.IOSerialFamily          10.0.6
    com.apple.iokit.IOBluetoothFamily          4.0.9f33
    com.apple.driver.AppleGraphicsControl          3.2.11
    com.apple.iokit.IONDRVSupport          2.3.5
    com.apple.iokit.IOGraphicsFamily          2.3.5
    com.apple.driver.AppleSMBusPCI          1.0.10d0
    com.apple.driver.AppleSMC          3.1.4d2
    com.apple.driver.IOPlatformPluginLegacy          1.0.0
    com.apple.driver.IOPlatformPluginFamily          5.2.0d16
    com.apple.driver.AppleUSBHIDMouse          175.8
    com.apple.driver.AppleHIDMouse          175.8
    com.apple.driver.AppleUSBHIDKeyboard          165.5
    com.apple.driver.AppleHIDKeyboard          165.5
    com.apple.iokit.IOSCSIMultimediaCommandsDevice          3.5.1
    com.apple.iokit.IOBDStorageFamily          1.7
    com.apple.iokit.IODVDStorageFamily          1.7.1
    com.apple.iokit.IOCDStorageFamily          1.7.1
    com.apple.iokit.IOUSBMassStorageClass          3.5.0
    com.apple.iokit.IOSCSIArchitectureModelFamily          3.5.1
    com.apple.driver.AppleThunderboltDPOutAdapter          1.8.5
    com.apple.driver.AppleThunderboltDPInAdapter          1.8.5
    com.apple.driver.AppleThunderboltDPAdapterFamily          1.8.5
    com.apple.driver.AppleThunderboltPCIDownAdapter          1.2.5
    com.apple.driver.AppleUSBMergeNub          5.2.5
    com.apple.iokit.IOUSBHIDDriver          5.2.5
    com.apple.driver.AppleUSBComposite          5.2.5
    com.apple.driver.AppleThunderboltNHI          1.6.0
    com.apple.iokit.IOThunderboltFamily          2.1.1
    com.apple.iokit.IOUSBUserClient          5.2.5
    com.apple.iokit.IOFireWireFamily          4.5.5
    com.apple.iokit.IO80211Family          500.15
    com.apple.iokit.IOEthernetAVBController          1.0.2b1
    com.apple.iokit.IONetworkingFamily          3.0
    com.apple.iokit.IOAHCIFamily          2.2.1
    com.apple.iokit.IOUSBFamily          5.4.0
    com.apple.driver.AppleEFIRuntime          1.6.1
    com.apple.iokit.IOHIDFamily          1.8.0
    com.apple.iokit.IOSMBusFamily          1.1
    com.apple.security.sandbox          220
    com.apple.kext.AppleMatch          1.0.0d1
    com.apple.security.TMSafetyNet          7
    com.apple.driver.DiskImages          344
    com.apple.iokit.IOStorageFamily          1.8
    com.apple.driver.AppleKeyStore          28.21
    com.apple.driver.AppleACPIPlatform          1.6
    com.apple.iokit.IOPCIFamily          2.7.2
    com.apple.iokit.IOACPIFamily          1.4
    com.apple.kec.corecrypto          1.0

    Big ole' me too here. Tried on 3 different Mac minis. First 2 were originally Mac mini servers that were reformatted and Base OSX 10.8.2 installed, no server. Lots of automatic reboots. Only app added was FM Server. These were installed from scratch, no user migration, no other apps installed. Last Mac mini was a straight non-server, brand new off the shelf, only FMServer installed (and FM Pro - not running). Getting reboots from kernel panic several times a day. All these Mac minis had SSD drives. I have Time Machine running, but its set to ignore the FM Server folder. FMS is set to back-up the DBs to a FW800 connected drive. Apple Display connected via Thunderbolt -not sure any of this matters. (Also repaired permissions, ran fsck, Safe Boot, etc...).
    Don't know much about tracing the reason for a kernel panic but saw this near the top:
    BSD process name corresponding to current thread: java
    It's been happening for months, been banging my head aginast the wall thinking it was something I've done...

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