New Domain Controller does not show in our different site's Domain controller's Sites and Services

Hi,
we have two sites in our AD environment. OMA site and NY site. we have three domain controllers in our OMA site and two domain controllers in our NY site. All our DCs are windows server 2008R2 except one in our OMA site that is 2003R2 the domain
functional level is also 2003R2.
We decided to raise our functional level to 2008R2. I added a new domain controller in our OMA site and transferred all FESMOS from the DC that was running 2003R2 to this new domain controller.
the issue now is that our NY site does not make any connection with the new domain controller in OMA site. it does not even show it under sites and services. I have checked the DNS settings and everything. if you try to replicate the connections
from NY site it gives the following error: "The naming context is in the process of being removed or is not replicated from the specific server."
can anyone plz tell me why this is happening mt brain is just frozen at this moment and cant figure out why is this happening

Just noticed this replication issue has been going on for a while now but we never noticed until I added new DC. here is the error log for the NY site DC.
Log Name:      Directory Service
Source:        Microsoft-Windows-ActiveDirectory_DomainService
Date:          1/4/2014 8:11:40 AM
Event ID:      2042
Task Category: Replication
Level:         Error
Keywords:      Classic
User:          ANONYMOUS LOGON
Computer:      NORDC1.vertrue.com
Description:
It has been too long since this machine last replicated with the named source machine. The time between replications with this source has exceeded the tombstone lifetime. Replication has been stopped with this source.
 The reason that replication is not allowed to continue is that the two DCs may contain lingering objects.  Objects that have been deleted and garbage collected from an Active Directory Domain Services partition but still exist in the writable partitions
of other DCs in the same domain, or read-only partitions of global catalog servers in other domains in the forest are known as "lingering objects".  If the local destination DC was allowed to replicate with the source DC, these potential lingering object
would be recreated in the local Active Directory Domain Services database.
Time of last successful replication:
2013-05-16 15:26:38
Invocation ID of source directory server:
9236ac56-d046-4632-b072-acbe823c5f6c
Name of source directory server:
accde843-11b2-476c-9783-9b29252d0ba5._msdcs.vertrue.com
Tombstone lifetime (days):
90
The replication operation has failed.
User Action:
  The action plan to recover from this error can be found at
http://support.microsoft.com/?id=314282.
 If both the source and destination DCs are Windows Server 2003 DCs, then install the support tools included on the installation CD.  To see which objects would be deleted without actually performing the deletion run "repadmin /removelingeringobjects
<Source DC> <Destination DC DSA GUID> <NC> /ADVISORY_MODE". The eventlogs on the source DC will enumerate all lingering objects.  To remove lingering objects from a source domain controller run "repadmin /removelingeringobjects <Source
DC> <Destination DC DSA GUID> <NC>".
 If either source or destination DC is a Windows 2000 Server DC, then more information on how to remove lingering objects on the source DC can be found at
http://support.microsoft.com/?id=314282 or from your Microsoft support personnel.
 If you need Active Directory Domain Services replication to function immediately at all costs and don't have time to remove lingering objects, enable replication by setting the following registry key to a non-zero value:
Registry Key:
HKLM\System\CurrentControlSet\Services\NTDS\Parameters\Allow Replication With Divergent and Corrupt Partner
 Replication errors between DCs sharing a common partition can prevent user and compter acounts, trust relationships, their passwords, security groups, security group memberships and other Active Directory Domain Services configuration data to vary between
DCs, affecting the ability to log on, find objects of interest and perform other critical operations. These inconsistencies are resolved once replication errors are resolved.  DCs that fail to inbound replicate deleted objects within tombstone lifetime
number of days will remain inconsistent until lingering objects are manually removed by an administrator from each local DC.  Additionally, replication may continue to be blocked after this registry key is set, depending on whether lingering objects are
located immediately.
Alternate User Action:
Force demote or reinstall the DC(s) that were disconnected.
Event Xml:
<Event xmlns="http://schemas.microsoft.com/win/2004/08/events/event">
  <System>
    <Provider Name="Microsoft-Windows-ActiveDirectory_DomainService" Guid="{0e8478c5-3605-4e8c-8497-1e730c959516}" EventSourceName="NTDS Replication" />
    <EventID Qualifiers="49152">2042</EventID>
    <Version>0</Version>
    <Level>2</Level>
    <Task>5</Task>
    <Opcode>0</Opcode>
    <Keywords>0x8080000000000000</Keywords>
    <TimeCreated SystemTime="2014-01-04T13:11:40.963263500Z" />
    <EventRecordID>38018</EventRecordID>
    <Correlation />
    <Execution ProcessID="660" ThreadID="1596" />
    <Channel>Directory Service</Channel>
    <Computer>NORDC1.vertrue.com</Computer>
    <Security UserID="S-1-5-7" />
  </System>
  <EventData>
    <Data>2013-05-16 15:26:38</Data>
    <Data>9236ac56-d046-4632-b072-acbe823c5f6c</Data>
    <Data>accde843-11b2-476c-9783-9b29252d0ba5._msdcs.vertrue.com</Data>
    <Data>90</Data>
    <Data>Allow Replication With Divergent and Corrupt Partner</Data>
    <Data>System\CurrentControlSet\Services\NTDS\Parameters</Data>
  </EventData>
</Event>

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