Permissions differ but don't seem to repair

Hello,
When I run verify permissions a long list of things pop up saying the permissions differ. But when I run repair permissions the same things pop up as differing permissions. I thought maybe it was just the computer telling me it was fixing the problem, but, out of curiosity, I ran verify permissions again. The same things popped up in the window. I've also got a problem with Safari, Mail, and iTunes hanging and when I try to force quit the application it won't actually force quit and the blue on light in the dock stays lit. I also noticed that one of the messages in verify permissions said something about iTunes. Could these two things possibly be connected. I was just about to run an archive install because I read in a thread that this would fix the latter problem of applications not quitting. But I also keep reading about verifying permissions before doing that, and I don't think I've had a successful verify and repair yet. Any and every piece of help is appreciated
Edit-now it's saying that one thing is irreparable. Answers?
Message was edited by: MichaelJZilla

HI,
The permissions issues and Safari/Mail and iTunes issues are NOT related.
First. You can safely ignore the messages when you repair disk permissions. They are a result of recent software updates. As long as you see these words at the bottom of the window;
Permissions repair complete, you have nothing to worry about.
Now, applications that freeze or crash and you can't quit.. that's different. Might be an underlying problem. Boot from your install disk and check the hard disk for errors.
*"and I don't think I've had a successful verify and repair yet."*
Do you mean you've run Disk Utility and it's reported errors and they aren't repaired? Here's how to do that.
Insert the installer disk and Restart, holding down the "C" key until grey Apple appears.
Go to Installer menu (Panther and earlier) or Utilities menu (Tiger and later) and launch Disk Utility.
Select your HDD (manufacturer ID) in the left panel.
Select First Aid in the Main panel.
*(Check S.M.A.R.T Status of HDD at the bottom of right panel. It should say: Verified)*
Click Repair Disk on the bottom right.
If DU reports disk does not need repairs quit DU and restart.
If DU reports errors Repair again and again until DU reports disk is repaired.
When you are finished with DU, from the Menu Bar, select Utilities/Startup Manager.
Select your start up disk and click Restart
Check to see how much free disk space there is. Right or control click the MacintoshHD icon. Click Get Info. In the Get Info window you will see Capacity and Available. Make sure you always have a minimum of 10% to 15% free disk space at all times.
Carolyn

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    Permissions differ on ./usr/lib/php/build/Makefile.global, should be -r--r--r-- , they are -r-xr-xr-x
    Owner and group corrected on ./usr/lib/php/build/Makefile.global
    Permissions corrected on ./usr/lib/php/build/Makefile.global
    Permissions differ on ./usr/lib/php/build/acinclude.m4, should be -r--r--r-- , they are -r-xr-xr-x
    Owner and group corrected on ./usr/lib/php/build/acinclude.m4
    Permissions corrected on ./usr/lib/php/build/acinclude.m4
    Permissions differ on ./usr/lib/php/build/mkdep.awk, should be -r--r--r-- , they are -r-xr-xr-x
    Owner and group corrected on ./usr/lib/php/build/mkdep.awk
    Permissions corrected on ./usr/lib/php/build/mkdep.awk
    Permissions differ on ./usr/lib/php/build/phpize.m4, should be -r--r--r-- , they are -r-xr-xr-x
    Owner and group corrected on ./usr/lib/php/build/phpize.m4
    Permissions corrected on ./usr/lib/php/build/phpize.m4
    Permissions differ on ./usr/lib/php/build/scan_makefile_in.awk, should be -r--r--r-- , they are -r-xr-xr-x
    Owner and group corrected on ./usr/lib/php/build/scan_makefile_in.awk
    Permissions corrected on ./usr/lib/php/build/scan_makefile_in.awk
    Permissions differ on ./usr/lib/system/libmathCommon.A.dylib, should be -r-xr-xr-x , they are -rwxr-xr-x
    Owner and group corrected on ./usr/lib/system/libmathCommon.A.dylib
    Permissions corrected on ./usr/lib/system/libmathCommon.A.dylib
    Permissions differ on ./usr/libexec/dumpemacs, should be -r-sr-xr-x , they are -r-xr-xr-x
    Owner and group corrected on ./usr/libexec/dumpemacs
    Permissions corrected on ./usr/libexec/dumpemacs
    Permissions repair complete
    The privileges have been verified or repaired on the selected volume
    Then I sometimes get the brown screen that states,You must re-start your computer.
    I have already zeroed out the hard drive and re-installed Panther and the upgrade Tiger disc.
    I repair permissions using the Tiger disc upgrade.
    Can anyone help me with this??

    > I repair permissions using the Tiger disc upgrade.
    One thing to note...  When running Repair Disk Permissions, it is best to run it while started up normally, from your normal startup disk, not from a Mac OS X installation disc.  The only time you should run it while started up from an installation disc is if some problem is preventing you from starting up normally. OTOH, Repair Disk can only be used when starting up from a different disk (such as an installation disc).
    So, I would start up normally, run Disk Utility, and use Repair Disk Permissions on your normal startup disk.
    NOTE:  Repair Disk Permissions often gives alerts messages that can be ignored.  They are more "informational," not serious errors.
    http://support.apple.com/kb/TS1448
    You should still run it periodically.  When you run it, what needs to be repaired has been repaired; consider the rest of it an FYI.  I've never experience a problem, where a Repair Disk Permissions message actually caused a problem.  But, if you ever get an error while running Repair Disk (or Verify Disk), that is usually a serious problem.

  • Disk permissions do not repair: Verify permissions for "Macintosh HD" Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/dt.jar", should be lrwxr-xr-x , they are lrw-r--r-- . Permissions differ on "System/Library/Jav

    Disk Utility does not repair Permissions (shows repaired but just come back up again). See problems:
    Verify permissions for “Macintosh HD”
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/dt.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jce.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jconsole.ja r", should be lrwxr-xr-x , they are lrw-r--r-- .
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/management- agent.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
    User differs on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib", should be 0, user is 95.
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/dt.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/jce.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/management -agent.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/security/b lacklist", should be lrwxr-xr-x , they are lrw-r--r-- .
    User differs on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Libraries", should be 0, user is 95.
    Permissions differ on "System/Library/Java/Support/Deploy.bundle/Contents/Home/lib/security/cacerts", should be lrwxr-xr-x , they are lrw-r--r-- .
    Permissions differ on "System/Library/Java/Support/Deploy.bundle/Contents/Resources/Java/deploy.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
    Permissions differ on "System/Library/Java/Support/Deploy.bundle/Contents/Resources/JavaPluginCocoa.b undle/Contents/Resources/Java/deploy.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/Support/Rem ote Desktop Message.app/Contents/Resources/zh_TW.lproj/UIAgent.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/Su pport/LockScreen.app/Contents/Resources/zh_TW.lproj/MainMenu.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/Support/Rem ote Desktop Message.app/Contents/Resources/zh_CN.lproj/UIAgent.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/Su pport/LockScreen.app/Contents/Resources/zh_CN.lproj/MainMenu.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/Support/Rem ote Desktop Message.app/Contents/Resources/ko.lproj/UIAgent.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/Su pport/LockScreen.app/Contents/Resources/ko.lproj/MainMenu.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/Support/Rem ote Desktop Message.app/Contents/Resources/Dutch.lproj/UIAgent.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/Su pport/LockScreen.app/Contents/Resources/Dutch.lproj/MainMenu.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/Su pport/LockScreen.app/Contents/Resources/Italian.lproj/MainMenu.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/Support/Rem ote Desktop Message.app/Contents/Resources/Spanish.lproj/UIAgent.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/Su pport/LockScreen.app/Contents/Resources/Spanish.lproj/MainMenu.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/Support/Rem ote Desktop Message.app/Contents/Resources/French.lproj/UIAgent.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/Su pport/LockScreen.app/Contents/Resources/French.lproj/MainMenu.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/Support/Rem ote Desktop Message.app/Contents/Resources/German.lproj/UIAgent.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/Su pport/LockScreen.app/Contents/Resources/German.lproj/MainMenu.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/Support/Rem ote Desktop Message.app/Contents/Resources/Japanese.lproj/UIAgent.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/Su pport/LockScreen.app/Contents/Resources/Japanese.lproj/MainMenu.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar", should be lrwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar", should be lrwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar", should be lrwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle", should be drwxr-xr-x , they are lrwxr-xr-x .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
    Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
    Permissions differ on "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/Support/Rem ote Desktop Message.app/Contents/Resources/English.lproj/UIAgent.nib", should be drwxr-xr-x , they are -rwxr-xr-x .
    Permissions differ on "System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/Su pport/LockScreen.app/Contents/Resources/English.lproj/MainMenu.nib", should be drwxr-xr-x , they are -rwxr-xr-x .

    Ignore all these.
    http://support.apple.com/kb/TS1448?viewlocale=en_US

  • Trying to repair permission and I always get this: Permissions differ on "Applications/Safari.app/Contents/Resources/Safari.help/Contents/Resources/inde x.html"; should be lrwxr-xr-x ; they are -rwxr-xr-x .

    Trying to repair permission and I always get this:
    Permissions differ on “Applications/Safari.app/Contents/Resources/Safari.help/Contents/Resources/inde x.html”; should be lrwxr-xr-x ; they are -rwxr-xr-x .
    I even fresh install the system and every time I do repair the permission I always end up with this even though it said repaired.
    I figure this is the problem my laptop, sometime it wont save files or documents and it goes in limbo and had to force shutdown and have to restart on the
    booth drive to have it permission repair. I just updated to 10.9.3 and will see if this stop the crashing but repair permission notice is still the same.
    Any feedback please....Thanks
    Model Name:          MacBook Pro 13-inch, Mid 2010
      Model Identifier:          MacBookPro7,1
      Processor Name:          Intel Core 2 Duo
      Processor Speed:          2.4 GHz
      Number of Processors:          1
      Total Number of Cores:          2
      L2 Cache:          3 MB
      Memory:          4 GB
      Bus Speed:          1.07 GHz
      Boot ROM Version:          MBP71.0039.B0E
      SMC Version (system):          1.62f7
      Serial Number (system):          7302895ZATM
      Hardware UUID:          0B62E320-214C-5EE8-9EBC-106E01BE083D
      Sudden Motion Sensor:
      State:          Enabled

    AmanteDesign wrote:
    Trying to repair permission and I always get this:
    Permissions differ on “Applications/Safari.app/Contents/Resources/Safari.help/Contents/Resources/inde
    I see the same thing since the general release of 10.9.3. This did not occur in prior versions.

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