Problem with Java after System Upgrade to 10.5.7

Hi,
I am facing problem with Java after having run Software upgrades.
Here is the whole story. I recently moved to iMac 10.5.6 from PowerPc 10.4. On this new machine I was having problem running a 3rd party application, which requires JVM. As this application worked well on Tiger, I decided to upgrade JVM on my iMAC using Software Upgrade(was I insane!!). As I like my systems to be updated (as with linux on my personal machine) I clicked "install all". As a result I have the following upgrades run on my machine:
2009-05-20 13:12:01 +0200: Installed "Mac OS X Update Combined" (10.5.7)
2009-05-20 13:12:10 +0200: Installed "Remote Desktop Client Update" (3.2.2)
2009-05-20 13:12:26 +0200: Installed "Java For Mac OS X 10.5 Update 2" (1.0)
2009-05-20 13:58:36 +0200: Installed "Java for Mac OS X 10.5 Update 3" (1.0)
2009-05-20 13:58:44 +0200: Installed "AirPort Utility Software Update 2009-001" (5.4.1)
2009-05-20 13:59:07 +0200: Installed "QuickTime" (7.6)
2009-05-20 13:59:22 +0200: Installed "iPhoto Update" (7.1.5)
2009-05-20 13:59:28 +0200: Installed "iLife Support" (9.0.2)
2009-05-20 13:59:38 +0200: Installed "iDVD Update" (7.0.3)
2009-05-20 13:59:58 +0200: Installed "iTunes" (8.1.1)
But now, simply running $ java on the prompt hangs, i.e. it takes no action.
$ which java
/usr/bin/java
$ ls -ltr /usr/bin/java
May 20 15:09 /usr/bin/java -> /System/Library/Frameworks/JavaVM.framework/Versions/Current/Commands/java
$java (no response)
Here is the output of $ top
PID COMMAND %CPU TIME #TH #PRTS #MREGS RPRVT RSHRD RSIZE VSIZE
703 java 98.8% 0:38.54 3 110 72 480K 184K 1964K 40M
Any clues?
cheers

Hi man,
In the wake of this java problem I resorted to keep working on my old machine, and today in my spare time I tried to fix this new machine.
So I execute $java on prompt, and then try to check the files it has opened, using lsof -p pid
I see it referring to
/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/java
isn't this usually the JAVA_HOME
However, executing $/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/java
hangs!!
but
$/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/bin/java
works!!
$ pwd
/System/Library/Frameworks/JavaVM.framework/Versions/1.6/Home/bin
$ ./java -version
java version "1.6.0_07"
Java(TM) SE Runtime Environment (build 1.6.0_07-b06-153)
Java HotSpot(TM) 64-Bit Server VM (build 1.6.0_07-b06-57, mixed mode)
So, I changed the links as follows
borgraf:Versions raveesh$ l
total 72
drwxr-xr-x 3 root wheel 102 Mar 6 2008 1.3.1
lrwxr-xr-x 1 root wheel 3 May 21 19:42 1.4.1 -> 1.4
drwxr-xr-x 8 root wheel 272 May 21 19:42 1.6.0
lrwxr-xr-x 1 root wheel 3 May 21 19:44 OldCurrentJDK -> 1.5
lrwxr-xr-x 1 root wheel 5 May 21 19:44 1.4 -> 1.4.2
lrwxr-xr-x 1 root wheel 5 May 21 19:44 1.3 -> 1.3.1
lrwxr-xr-x 1 root wheel 5 May 21 19:44 1.5 -> 1.5.0
drwxr-xr-x 8 root wheel 272 May 21 19:44 1.4.2
drwxr-xr-x 8 root wheel 272 May 21 19:44 1.5.0
lrwxr-xr-x 1 root wheel 5 May 21 19:44 1.6 -> 1.6.0
lrwxr-xr-x 1 root wheel 1 May 21 19:44 OldCurrent -> A
drwxr-xr-x 8 root wheel 272 May 21 19:44 A
lrwxr-xr-x 1 root wheel 3 Jun 4 17:14 CurrentJDK -> 1.6
lrwxr-xr-x 1 root wheel 3 Jun 4 17:21 Current -> 1.6
Linking my Current and CurrentJDK to 1.6 and it works!
However, shall that be the reason!
what is in your /Versions/Current/
I got the following
$ ls /System/Library/Frameworks/JavaVM.framework/Versions/Current
CodeResources Frameworks JavaVM
Commands Headers Resources
There is no /Home in here, which is usually the case for /1.5 or /1.6
Anyways, things seems to work for the moment. Lets see if I get problem with using Java.
thanks

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    Good morning Mogens Pedersen
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    Good morning Mogens Pedersen
    Thanks for using our forum
    I am a Cisco network support engineer, I have a recommendation, before you  upgrade any device in the future. Always keep in mind to make a backup of your data, in this way if you have to reset the device to factory settings you will not lose that information. Having said that, reset the router to the fabric configuration using the back little button, remember when you do that, you are going to loose your current configuration.
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    Good morning Mogens Pedersen
    Thanks for using our forum
    I am a Cisco network support engineer, I have a recommendation, before you  upgrade any device in the future. Always keep in mind to make a backup of your data, in this way if you have to reset the device to factory settings you will not lose that information. Having said that, reset the router to the fabric configuration using the back little button, remember when you do that, you are going to loose your current configuration.
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    Greetings,
    Johnnatan Rodriguez Miranda.
    Cisco network support engineer

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    Good morning Mogens Pedersen
    Thanks for using our forum
    I am a Cisco network support engineer, I have a recommendation, before you  upgrade any device in the future. Always keep in mind to make a backup of your data, in this way if you have to reset the device to factory settings you will not lose that information. Having said that, reset the router to the fabric configuration using the back little button, remember when you do that, you are going to loose your current configuration.
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    http://www.cisco.com/cisco/software/release.html?mdfid=282414010&release=4.0.0.7&relind=AVAILABLE&softwareid=282465800&rellifecycle=&reltype=latest
    I hope you find this answer useful, if it was satisfactory  for you, please mark the question as Answered
    and please rate helpful posts 
    Greetings,
    Johnnatan Rodriguez Miranda.
    Cisco network support engineer

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