Problem with pasting a smart object in Photoshop

Question

I create artworks using both Illustrator and Photoshop by pasting different elements as smart objects in Photoshop on different layers  but I often have a problem.
To make the pasted content  positioned exactly on the same place as in Illustrator, I create a box with no fill and stroke encompassing the whole artwork (with the thick pink frame on the image below) and paste different elements along with the encompassing box on different layers in Photoshop.
The problem is that often during the creation of the artwork it may require using a clipping path containing objects bigger than the encompassing box. Then when pasting in Photoshop the size of the bounding box containing the invisible parts of the objects is factored in instead of the visible parts only.
The image bolow is a simplified example. On the left side  is the selection in Illustrator but when pasted in Photoshop although it keeps the same visibility as on the left size, the encompassing frame is the bounding box shown on the right side and this messes up the position of the placed objects. I know the problem can be avoided if I know in advance how big the eventual artwork including the invisible objects would be and create an encompassing box big enough but often this is not the case. What do yo think would be the easiest way to fix this problem once it occurs?

Answer 1

Just so you are aware, photoshop has a bug when sensing illustrator files.
If your starting with a new document and letting photoshop sense the size from the clipboard, set the physical size to inches or centimeters before changing the ppi from 72 to 300. By default, photoshop is set to pixel dimentions and ppi is disabled even though you can type in a new value, it does not alter the size any.