Problems with the Migration assistant from a case-sensitve MacPro/Mavericks to a case-insensitive iMac5K/Yosemite

Hello
My previous Mac was a 2008 8-core 2.8GHz MacPro with Mavericks and a case-sensitive file system.
I received my iMac5K yesterday and attempted a migration.
I was surprised to see that my 1.5TB of data went through the FW800/TB link within 6 hours.
Actually it skipped many things including my Aperture library, my iTunes directoy, my Video/FCP project directory and, most importantly my mail...
This morning I tried to start a new migration assistant using my Mac Pro's USB3 Time Machine backup hooked to the iMac.
The iMac could not see it at all.
What do I perform the wrong way?
Thanks for your help: there's all my life on this Mac Pro, and I want it tranfered to this better, modernersystem.
Mirko

Did you try a Spotlight search?
I actually found the files but everything is all over the place in private/var/folders/zz/zyxvpxvq6csfxvn_n0000000000000 (yes I don't know what this is)
/cleanupatstartup/SMSsandboxTools-tmp/users/(user) and there they are.
Seems like a complete wipe, reinstall, and try it all over again is in order.

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