Project opens with missing sound

Using Premiere Pro CS4.
So I have a project with footage already imported. The footage has audio. Premiere can play this audio just fine.
However - sometimes, when I open one of these projects, Premiere has randomly decided not to play the audio for some of the clips. I can 'fix' the problem by closing premiere, deleting all the temp files, and reopening the file, thus forcing Premiere to re-conform everything (at least I think that's why it works).
I am deleting the audio created files as I go as I am editing some 400 projects so I'm trying to remove clutter (I'm not rendering anything right now, so there's no real reason to have all the extra files). I DO, however, wait for each project to finish conforming before I touch anything, so I don't know why it keeps randomly dropping audio and my work around is costing me a great deal of time (and is just VERY ANNOYING).
Thanks for any suggestions.

Is your volume turned up when you shut down?

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