Signatures disappearing!

I have a few documents I need to merge into a single PDF file through acrobat 9.0. One of them is a pdf form with electronic signatures. When I combine into a single PDF file (using the Combine > Merge Files Into a Single PDF File), the signature disappears! Please help!

Actually you can be happy if the signature simply disappears. If it didn't disappear but instead was copied as is into a merged document, it would display as invalid, either due to changes to the signed content or due to added content.
In your own comment you indicated reasons why in the course of a document merge signatures should break, and Adobe and their software have become more and and sensitive concerning the changes allowed to signed documents.
Concerning your use case. Have you considered creating a PDF portfolio instead? This is the alternative option in the Combine > submenu.

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