Snow Leopard 10.6.2 takes a long time to run 'X11.app' (with system log)

Hello everyone, English is not my mother tongue so may not be exactly correct, sorry about that.
Background:
I have a MacBook White (13-inch, Mid 2009) that isn't unibody, and was running Leopard 10.5.
I did a clean installation and now Snow Leopard 10.6.2, with iLife, iWork, and many many apps.
I am the only one who will use the Mac and my user account is as the 'admin'.
I previously had a problem concerning X11 too:
http://discussions.apple.com/thread.jspa?threadID=2343732
*What I've done:*
(1) rename my HD to 'Michaels_Home' under 'Get Info' from Finder (I can't rename in Disk Utility though)
(2) press return (enter)
(3) change my home folder path to the '/Volumes/Michaels_Home/Users/Michael' (http://eshop.macsales.com/Reviews/Framework.cfm?page=Tips/relocate3/relocate3.ht ml)
(4) restart
(5) log in and open X11
(6) problem solved!!
==========
*BUT NOW* I have a problem after:
(1) log in as the root user, and use command +ditto -V xyz xyz+ to copy my home folder from '/Volumes/Michaels_Home/Users/Michael' to '/Users>Michael'
(2) change my home folder path to the '/Users/Michael' (http://eshop.macsales.com/Reviews/Framework.cfm?page=Tips/relocate3/relocate3.ht ml)
(3) use the Mac OS X Snow Leopard USD$29 disc to boot my Mac up
(4) delete the 'Michaels_Home' partition (I had 3 partitions: (1) Macintosh HD (2) Michaels_Home (3) Windows XP Professional)
(5) resize the 'Macintosh HD' partition
(6) boot from Macintosh HD
(7) find that there's a problem about X11
_The problem:_
it takes a *long time* for X11 to start.
When I try to open the 'X11.app', the X11 icon begins jumping on the Dock, but nothing happens.
Jumping and jumping... finally, it doesn't jump any more, with just the X11 icon on the dock.
What's more, there is no white dot under the icon, which means the app isn't running at the moment.
I right-clicked the icon, it shows me 'application not responding'.
So, I open the *Activity Monitor*, and I can see there are 3 apps related to X11 are running:
(1) X11
(2) X11.bin
(3) xauth
*At the moment now, if you would wait for about 1.5 min., X11 will open.*
Please see below for the system log (from 'FREEZING' to 'WORKING')
==========
Mar 1 00:42:10 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: main(): argc=2
Mar 1 00:42:10 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[0] = /Applications/Utilities/X11.app/Contents/MacOS/X11.bin
Mar 1 00:42:10 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[1] = -psn0139298
Mar 1 00:42:10 n219073058253 [0x0-0x22022].org.x.X11[327]: Waiting for startup parameters via Mach IPC.
Mar 1 00:42:10 n219073058253 org.x.startx[335]: font_cache: Scanning user font directories to generate X11 font caches
Mar 1 00:42:10 n219073058253 org.x.startx[335]: font_cache: Updating FC cache
Mar 1 00:42:10 n219073058253 org.x.privileged_startx[344]: font_cache: Scanning system font directories to generate X11 font caches
Mar 1 00:42:10 n219073058253 defaults[370]: \nThe domain/default pair of (org.x.X11, dpi) does not exist
Mar 1 00:42:12 n219073058253 org.x.privileged_startx[344]: font_cache: Updating FC cache
Mar 1 00:42:13 n219073058253 org.x.startx[335]: font_cache: Done
Mar 1 00:42:14 n219073058253 org.x.privileged_startx[344]: font_cache: Done
Mar 1 00:42:31 n219073058253 org.x.startx[335]: xauth: timeout in locking authority file /Users/Michael/.serverauth.335
Mar 1 00:42:51 n219073058253 org.x.startx[335]: xauth: timeout in locking authority file /Users/Michael/.Xauthority
Mar 1 00:43:31: --- last message repeated 1 time ---
Mar 1 00:43:31 n219073058253 org.x.startx[335]: xauth: timeout in locking authority file /Users/Michael/.Xauthority
Mar 1 00:43:51: --- last message repeated 1 time ---
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: Listening on socket for fd handoff: (4) /var/tmp/tmp.0.9OYerf
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: Thread created for handoff. Returning success to tell caller to connect and push the fd.
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: Received new $DISPLAY fd: 6 ... sleeping to allow xinitrc to catchup.
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: dostart_x11server(): argc=6
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[0] = /usr/X11/bin/X
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[1] =
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[2] = -nolisten
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[3] = tcp
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[4] = -auth
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[5] = /Users/Michael/.serverauth.335
Mar 1 00:43:51 n219073058253 org.x.startx[335]: Xquartz: Handoff connection established (try 1 of 5) on fd 6, "/var/tmp/tmp.0.9OYerf". Sending message.
Mar 1 00:43:51 n219073058253 org.x.startx[335]: Xquartz: Message sent. Closing handoff fd.
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: Xquartz starting:
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: X.Org X Server 1.4.2-apple45
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: Build Date: 20090705
Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: (EE) XKB: Couldn't open rules file /usr/X11/share/X11/xkb/rules/base
Mar 1 00:43:54: --- last message repeated 1 time ---
Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app Handing off fd to server thread via DarwinListenOnOpenFD(6)
Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: DarwinListenOnOpenFD: 6
Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: Calling ListenOnOpenFD() for new fd: 6
Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: Launching /usr/X11/bin/xterm:
Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[0] = /bin/sh
Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[1] = -c
Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[2] = /usr/X11/bin/xterm
==========
I quit the X11:
==========
Mar 1 00:45:45 n219073058253 [0x0-0x22022].org.x.X11[327]: Quitting Xquartz...
Mar 1 00:45:45 n219073058253 org.x.startx[335]: /usr/X11/bin/xinit: connection to X server lost.
Mar 1 00:45:45 n219073058253 org.x.startx[335]: waiting for X server to shut down
==========
AFTER quitting X11, I can see something related X11 is stilling running:
==========
Mar 1 00:46:06 n219073058253 org.x.startx[335]: xauth: timeout in locking authority file /Users/Michael/.Xauthority
==========
So what actually causes this problem?
Thanks in advance!

It turns out that there's something wrong about permissions.
Here's the fix:
(1) log in as the +root user+
(2) type +chown -R Michael:staff ~Michael+
(3) log out the +root user+
(4) log in your account
(5) done!
Hope this thread will help those who encounter the same problem as me!

Similar Messages

  • Snow Leopard 10.6.2 can't run 'X11.app' (with system log)

    Hello everyone, English is not my mother tongue so may not be exactly correct, sorry about that.
    Background:
    I have a MacBook White (13-inch, Mid 2009) that isn't unibody, and was running Leopard 10.5.
    I am the only one that will use the Mac and my user account is as the 'admin'.
    When I was using 10.5, I could open the 'X11.app'.
    But few days ago, I did a clean installation of 10.6.2 Snow Leopard from the USD$29 disc.
    After that I installed the iLife '09 (the gray disc bundled with the MacBook),
    and I cloned the drive to my ext. FireWire HD immediately after the installation of SL and iLife'09 by using the CCC (Carbon Copy Cloner).
    After that, of course, I was going to install the apps I need, and update the software.
    _But the problem appears:_
    When I try to open the 'X11.app', the X11 icon begins jumping on the Dock, but nothing happens.
    Jumping and jumping... finally, it doesn't jump any more, with just the X11 icon on the dock.
    What's more, there is no white dot under the icon, which means the app isn't running at the moment.
    I right-clicked the icon, it shows me 'application not responding'.
    So, I open the *Activity Monitor*, and I can see there are two apps related to X11 are running:
    (1) X11
    (2) X11.bin
    Please see below for the system log (around 1min. log, starting with the time when I open the X11)
    ==========
    Feb 20 15:56:30 (my user name)-(my user name)-MacBook 0x0-0x33033.org.x.X1128300: X11.app: main(): argc=2
    Feb 20 15:56:30 (my user name)-(my user name)-MacBook 0x0-0x33033.org.x.X1128300: argv[0] = /Applications/Utilities/X11.app/Contents/MacOS/X11.bin
    Feb 20 15:56:30 (my user name)-(my user name)-MacBook 0x0-0x33033.org.x.X1128300: argv[1] = -psn0208947
    Feb 20 15:56:30 (my user name)-(my user name)-MacBook 0x0-0x33033.org.x.X1128300: Waiting for startup parameters via Mach IPC.
    Feb 20 15:56:33 (my user name)-(my user name)-MacBook org.x.startx28308: font_cache: Scanning user font directories to generate X11 font caches
    Feb 20 15:56:33 (my user name)-(my user name)-MacBook org.x.startx28308: font_cache: Updating FC cache
    Feb 20 15:56:33 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Scanning system font directories to generate X11 font caches
    Feb 20 15:56:33 (my user name)-(my user name)-MacBook defaults28334: \nThe domain/default pair of (org.x.X11, dpi) does not exist
    Feb 20 15:56:33 (my user name)-(my user name)-MacBook org.x.startx28308: xauth: creating new authority file /Volumes/(my user name)'s Home/Users/(my user name)/.serverauth.28308
    Feb 20 15:56:33 (my user name)-(my user name)-MacBook org.x.startx28308: /usr/X11/bin/startx: eval: line 288: unexpected EOF while looking for matching `''
    Feb 20 15:56:33 (my user name)-(my user name)-MacBook org.x.startx28308: /usr/X11/bin/startx: eval: line 289: syntax error: unexpected end of file
    Feb 20 15:56:33 (my user name)-(my user name)-MacBook com.apple.launchd.peruser.501135 (org.x.startx): Throttling respawn: Will start in 10 seconds
    Feb 20 15:56:34 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Updating FC cache
    Feb 20 15:56:36 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Done
    Feb 20 15:56:44 (my user name)-(my user name)-MacBook org.x.startx28441: font_cache: Scanning user font directories to generate X11 font caches
    Feb 20 15:56:44 (my user name)-(my user name)-MacBook org.x.startx28441: font_cache: Updating FC cache
    Feb 20 15:56:44 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Scanning system font directories to generate X11 font caches
    Feb 20 15:56:44 (my user name)-(my user name)-MacBook defaults28467: \nThe domain/default pair of (org.x.X11, dpi) does not exist
    Feb 20 15:56:44 (my user name)-(my user name)-MacBook org.x.startx28441: xauth: creating new authority file /Volumes/(my user name)'s Home/Users/(my user name)/.serverauth.28441
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    Feb 20 15:56:44 (my user name)-(my user name)-MacBook org.x.startx28441: /usr/X11/bin/startx: eval: line 289: syntax error: unexpected end of file
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    Feb 20 15:56:44 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Updating FC cache
    Feb 20 15:56:46 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Done
    Feb 20 15:56:54 (my user name)-(my user name)-MacBook org.x.startx28574: font_cache: Scanning user font directories to generate X11 font caches
    Feb 20 15:56:54 (my user name)-(my user name)-MacBook org.x.startx28574: font_cache: Updating FC cache
    Feb 20 15:56:54 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Scanning system font directories to generate X11 font caches
    Feb 20 15:56:54 (my user name)-(my user name)-MacBook defaults28602: \nThe domain/default pair of (org.x.X11, dpi) does not exist
    Feb 20 15:56:54 (my user name)-(my user name)-MacBook org.x.startx28574: xauth: creating new authority file /Volumes/(my user name)'s Home/Users/(my user name)/.serverauth.28574
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    Feb 20 15:57:04 (my user name)-(my user name)-MacBook org.x.startx28708: font_cache: Scanning user font directories to generate X11 font caches
    Feb 20 15:57:04 (my user name)-(my user name)-MacBook org.x.startx28708: font_cache: Updating FC cache
    Feb 20 15:57:04 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Scanning system font directories to generate X11 font caches
    Feb 20 15:57:04 (my user name)-(my user name)-MacBook defaults28734: \nThe domain/default pair of (org.x.X11, dpi) does not exist
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    Feb 20 15:57:14 (my user name)-(my user name)-MacBook org.x.startx28841: font_cache: Scanning user font directories to generate X11 font caches
    Feb 20 15:57:14 (my user name)-(my user name)-MacBook org.x.startx28841: font_cache: Updating FC cache
    Feb 20 15:57:14 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Scanning system font directories to generate X11 font caches
    Feb 20 15:57:14 (my user name)-(my user name)-MacBook defaults28869: \nThe domain/default pair of (org.x.X11, dpi) does not exist
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    Feb 20 15:57:14 (my user name)-(my user name)-MacBook org.x.startx28841: /usr/X11/bin/startx: eval: line 288: unexpected EOF while looking for matching `''
    Feb 20 15:57:14 (my user name)-(my user name)-MacBook org.x.startx28841: /usr/X11/bin/startx: eval: line 289: syntax error: unexpected end of file
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    Feb 20 15:57:16 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Done
    Feb 20 15:57:24 (my user name)-(my user name)-MacBook org.x.startx28974: font_cache: Scanning user font directories to generate X11 font caches
    Feb 20 15:57:24 (my user name)-(my user name)-MacBook org.x.startx28974: font_cache: Updating FC cache
    Feb 20 15:57:24 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Scanning system font directories to generate X11 font caches
    Feb 20 15:57:24 (my user name)-(my user name)-MacBook defaults29000: \nThe domain/default pair of (org.x.X11, dpi) does not exist
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    Feb 20 15:57:24 (my user name)-(my user name)-MacBook org.x.startx28974: /usr/X11/bin/startx: eval: line 289: syntax error: unexpected end of file
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    ==========
    It seems that the processes are repeating themselves,
    so I decide to end them in the *Activity Monitor*.
    For 'X11', I have to force quit.
    For 'X11.bin', 'quit' is enough.
    But after that, it seems that the processes are stilling running:
    ==========
    Feb 20 16:03:11 (my user name)-(my user name)-MacBook org.x.startx33510: xauth: creating new authority file /Volumes/(my user name)'s Home/Users/(my user name)/.serverauth.33510
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    Feb 20 16:03:21 (my user name)-(my user name)-MacBook org.x.startx33643: font_cache: Scanning user font directories to generate X11 font caches
    Feb 20 16:03:21 (my user name)-(my user name)-MacBook org.x.startx33643: font_cache: Updating FC cache
    Feb 20 16:03:21 (my user name)-(my user name)-MacBook org.x.privileged_startx206: font_cache: Scanning system font directories to generate X11 font caches
    Feb 20 16:03:21 (my user name)-(my user name)-MacBook defaults33669: \nThe domain/default pair of (org.x.X11, dpi) does not exist
    Feb 20 16:03:21 (my user name)-(my user name)-MacBook org.x.startx33643: xauth: creating new authority file /Volumes/(my user name)'s Home/Users/(my user name)/.serverauth.33643
    ==========
    As I've said, I have a clone of 10.6.2 on my ext. FireWire HD.
    So I've tried to boot the MacBook with the key 'option' pressed in order to boot from the clone.
    What surprises me is that I can open the X11 without any problem.
    And I've tried to open a new user account to test.
    Even if the account isn't 'admin', the X11 can be opened too.
    What this phenomenon tells me is that maybe there is an app(s) that I installed will make the X11 not open.
    I've Googled the problem and tried the following methods:
    (1) Reinstall the X11 from the Snow Leopard disc.
    (2) Log in as the 'root' user, go to *System Preferences* to create a temporary account (e.g. named 'test') so that I can delete my current account (e.g. named 'User') (I copied the UUID and pasted it into TextEdit, saving it on my different partition of ext. FireWire HD.). Then I open a new account with the same username (named 'User') and paste the UUID I previously saved to the newly created account (named 'User'), and then redirect the home folder path to the original home folder (the account named 'User' that I deleted).
    (3) Create an account for testing (e.g. named 'test'), set it as admin. Then log in as the 'root' user, to use 'ditto' command in Terminal to copy my home folder to the account named 'test'. After that, I make the account for testing (account name 'test') have the permission to read and write the files by pressing 'command + I' the home folder, and then set the user 'test' having the permission to read and write and apply this to all the enclosed folder.
    NONE of the above has worked.
    So what can I do in order to make my X11.app work again?
    Thanks in advance!!

    etresoft wrote:
    But you have it running in the other account. With X11 problems, this is as easy as it gets.
    I hope this problem can be solved soon...
    Unfortunately, I'm pretty sure you are going to have to use the Terminal.
    I see, thanks for the info.! (I am new to the Mac since 2009 )
    The only one that would cause any problem by being removed is ".Trash". You don't have any of the other files that Bob is talking about. It would be annoying for any heavy Terminal user to lose those dot files, but perfectly safe.
    There is no need to even attempt to backup anything in /tmp.
    Thanks for the info.!
    Try this. In System Preferences, select Sharing and enable "Remote Login". Login to that Standard user who can run X11 with no problem. Then, just as a test, run "ssh <mainuser>@localhost". Verify that you are in the home directory of the user with the X11 problems. Don't do anything yet. Just type 'exit' to logout.
    Reboot your machine. Login as the Standard User. Run "ssh <mainuser>@localhost" again. This time, run the "rm .<somefile>" on all those dot files (except for .Trash and maybe .CFUserEncoding). This time they should all stay deleted. Follow Bob's advice too and do "rm Library/Preferences/org.x.X11.plist". Type "cd /tmp" and delete everything you can find in there. You can't do any damage there. Type "exit" to quit the ssh session.
    Now logout of the standard user and log back in to your primary user and try it again.
    I am now at the standard account called 'test' and browse this web page using Safari through Wi-Fi.
    4 things:
    .bash_history
    .DS_Store
    .fontconfig
    .Xauthority
    ==========
    With the '.fontconfig', I can't delete it from the Terminal:
    +Michael-Leungs-MacBook:~ Michael$ rm .fontconfig+
    _+rm: .fontconfig: is a directory+_
    (At this moment, I Googled the 'rm' command and found these web pages:
    http://ss64.com/osx/
    http://newsourcemedia.com/blog/basic-terminal-commands/
    That's why I try the 'rmdir' and 'sudo rm'.
    But NONE of these command helps)
    +Michael-Leungs-MacBook:~ Michael$ rmdir .fontconfig+
    _+rmdir: .fontconfig: Directory not empty+_
    +Michael-Leungs-MacBook:~ Michael$ sudo rm .fontconfig+
    +WARNING: Improper use of the sudo command could lead to data loss+
    +or the deletion of important system files. Please double-check your+
    +typing when using sudo. Type "man sudo" for more information.+
    +To proceed, enter your password, or type Ctrl-C to abort.+
    Password:
    +Sorry, try again.+
    Password:
    _+rm: .fontconfig: is a directory+_
    +Michael-Leungs-MacBook:~ Michael$ sudo rm .fontconfig+
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    =========
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