[Solved] Gnome 3 Shell - Icons Missing After Update

After my last update session, some icons went missing in Gnome. Even more unsettling, only some are missing. From what I can tell, my application icons haven't gone anywhere, but things such as minimize, restore, close, etc. are 404. Here's a photo to explain: https://vps.nullh.net/uploads/gnome-icon-issue.png I also noticed nvidia is included in the last update. I searched the forums, but all of the other problems seemed to be different problems (e.g. application icons were all bunched up/missing, desktop icons "missing", etc.) I feel like I should probably have more icons in the folders, too, but I haven't looked in there before the problem to be sure. Also, Alt+F2 "r" doesn't make a difference, the shell reloads but the icons are still AWOL. If anyone has any ideas, I am all ears.
[zack@zack ~]$ ls /usr/share/icons/default
index.theme
[zack@zack ~]$ ls /usr/share/icons/Adwaita/
cursors
[2014-03-09 15:18] [PACMAN] upgraded linux (3.13.5-1 -> 3.13.6-1)
[2014-03-09 15:18] [PACMAN] upgraded man-pages (3.60-1 -> 3.61-1)
[2014-03-09 15:18] [PACMAN] upgraded mjpegtools (2.0.0-4 -> 2.1.0-1)
[2014-03-09 15:18] [PACMAN] upgraded mono (3.2.3-2 -> 3.2.8-1)
[2014-03-09 15:19] [PACMAN] upgraded nvidia (331.49-1 -> 334.21-2)
[2014-03-09 15:19] [PACMAN] upgraded opencl-nvidia (331.49-1 -> 334.21-3)
[2014-03-09 15:19] [PACMAN] upgraded orbit2 (2.14.19-2 -> 2.14.19-3)
[2014-03-09 15:19] [PACMAN] upgraded parted (3.1-3 -> 3.1-4)
[2014-03-09 15:19] [PACMAN] upgraded pkgfile (12-1 -> 13-1)
[2014-03-09 15:19] [PACMAN] upgraded ppp (2.4.6-1 -> 2.4.6-2)
[2014-03-09 15:19] [PACMAN] upgraded pulseaudio (4.0-6 -> 5.0-1)
[2014-03-09 15:19] [PACMAN] upgraded python-setuptools (2.2-1 -> 3.1-1)
[2014-03-09 15:19] [PACMAN] upgraded python2-lxml (3.3.0-1 -> 3.3.1-1)
[2014-03-09 15:19] [PACMAN] upgraded raptor (2.0.12-1 -> 2.0.13-1)
[2014-03-09 15:19] [PACMAN] upgraded rasqal (1:0.9.30-4 -> 1:0.9.32-1)
[2014-03-09 15:19] [PACMAN] upgraded rosegarden (13.10-2 -> 14.02-1)
[2014-03-09 15:19] [PACMAN] upgraded ruby (2.1.0-2 -> 2.1.1-1)
[2014-03-09 15:19] [PACMAN] upgraded s-nail (14.6.1-1 -> 14.6.2-1)
[2014-03-09 15:19] [PACMAN] upgraded smpeg (0.4.4-7 -> 0.4.5-1)
[2014-03-09 15:19] [PACMAN] upgraded subversion (1.8.5-3 -> 1.8.8-1)
[2014-03-09 15:19] [PACMAN] upgraded systemd-sysvcompat (208-11 -> 210-3)
[2014-03-09 15:19] [PACMAN] upgraded telepathy-mission-control (5.16.0-1 -> 5.16.1-1)
[2014-03-09 15:19] [PACMAN] upgraded virtuoso-base (1:6.1.7-2 -> 1:6.1.8-1)
[2014-03-09 15:19] [PACMAN] upgraded webkitgtk (2.2.5-1 -> 2.2.5-2)
[2014-03-09 15:19] [PACMAN] upgraded webkitgtk2 (1.10.2-8 -> 2.2.5-2)
[2014-03-09 15:19] [PACMAN] upgraded wine (1.7.13-1 -> 1.7.14-1)
[2014-03-09 15:19] [PACMAN] upgraded wireshark-cli (1.10.5-3 -> 1.10.5-4)
[2014-03-09 15:19] [PACMAN] upgraded wireshark-gtk (1.10.5-3 -> 1.10.5-4)
[2014-03-09 15:19] [PACMAN] upgraded xterm (301-1 -> 303-1)
[2014-03-09 15:19] [PACMAN] upgraded yelp (3.10.1-2 -> 3.10.2-1)
Last edited by nullh (2014-03-10 03:55:39)

I ran gnome-shell --replace to try to get some logs out of it. Apparently, it doesn't know how vector files work any more.
[zack@zack ~]$ gnome-shell --replace
Gjs-Message: JS LOG: GNOME Shell started at Sun Mar 09 2014 20:36:53 GMT-0700 (MST)
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/running-indicator.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-border.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-highlight-wide.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/running-indicator.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-border.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-highlight-wide.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-border.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-highlight-wide.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-border.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-highlight-wide.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-border.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-highlight-wide.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-border.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-highlight-wide.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-border.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/panel-button-highlight-wide.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format
(gnome-shell:4695): St-WARNING **: Failed to load /usr/share/gnome-shell/theme/close-window.svg: Unrecognized image file format

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Nov 17 12:26:09 Whitcomb dbus[232]: [system] Activating via systemd: service name='org.freedesktop.PolicyKit1' unit='polkit.service'
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Nov 17 12:26:15 Whitcomb kernel: input: Power Button as /devices/LNXSYSTM:00/LNXPWRBN:00/input/input4
Nov 17 12:26:15 Whitcomb kernel: ACPI: Power Button [PWRF]
Nov 17 12:26:15 Whitcomb kernel: input: PC Speaker as /devices/platform/pcspkr/input/input5
Nov 17 12:26:15 Whitcomb kernel: pci_hotplug: PCI Hot Plug PCI Core version: 0.5
Nov 17 12:26:15 Whitcomb kernel: shpchp: Standard Hot Plug PCI Controller Driver version: 0.4
Nov 17 12:26:15 Whitcomb kernel: microcode: CPU0 sig=0xf34, pf=0x4, revision=0x8
Nov 17 12:26:15 Whitcomb kernel: parport_pc 00:0b: reported by Plug and Play ACPI
Nov 17 12:26:15 Whitcomb kernel: parport0: PC-style at 0x378, irq 7 [PCSPP,TRISTATE]
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Nov 17 12:26:15 Whitcomb kernel: psmouse serio1: hgpk: ID: 10 00 64
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Nov 17 12:26:15 Whitcomb dbus-daemon[232]: dbus[232]: [system] Rejected send message, 1 matched rules; type="method_call", sender=":1.2" (uid=0 pid=235 comm="/usr/sbin/gdm-binary ") interface="org.freedesktop.DBus.Properties" member="GetAll" error name="(unset)" requested_reply="0" destination=":1.5" (uid=0 pid=311 comm="/usr/lib/gdm/gdm-simple-slave --display-id /org/gn")
Nov 17 12:26:15 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activating via systemd: service name='org.freedesktop.ColorManager' unit='colord.service'
Nov 17 12:26:15 Whitcomb dbus-daemon[232]: dbus[232]: [system] Successfully activated service 'org.freedesktop.ColorManager'
Nov 17 12:26:15 Whitcomb dbus-daemon[232]: dbus[232]: [system] Successfully activated service 'org.freedesktop.PolicyKit1'
Nov 17 12:26:15 Whitcomb kernel: microcode: CPU1 sig=0xf34, pf=0x4, revision=0x8
Nov 17 12:26:15 Whitcomb kernel: microcode: Microcode Update Driver: v2.00 <[email protected]>, Peter Oruba
Nov 17 12:26:15 Whitcomb kernel: cfg80211: Calling CRDA to update world regulatory domain
Nov 17 12:26:15 Whitcomb kernel: via_rhine: v1.10-LK1.5.0 2010-10-09 Written by Donald Becker
Nov 17 12:26:15 Whitcomb kernel: via_rhine: Broken BIOS detected, avoid_D3 enabled
Nov 17 12:26:15 Whitcomb kernel: ACPI: PCI Interrupt Link [ALKD] enabled at IRQ 23
Nov 17 12:26:15 Whitcomb kernel: via-rhine 0000:00:12.0: setting latency timer to 64
Nov 17 12:26:15 Whitcomb kernel: via-rhine 0000:00:12.0: eth0: VIA Rhine II at 0x1cc00, 00:19:db:6a:70:49, IRQ 23
Nov 17 12:26:15 Whitcomb kernel: via-rhine 0000:00:12.0: eth0: MII PHY found at address 1, status 0x786d advertising 01e1 Link c1e1
Nov 17 12:26:15 Whitcomb kernel: input: ImPS/2 Generic Wheel Mouse as /devices/platform/i8042/serio1/input/input6
Nov 17 12:26:15 Whitcomb kernel: ath5k 0000:00:07.0: registered as 'phy0'
Nov 17 12:26:15 Whitcomb kernel: ath: EEPROM regdomain: 0x10
Nov 17 12:26:15 Whitcomb kernel: ath: EEPROM indicates we should expect a direct regpair map
Nov 17 12:26:15 Whitcomb kernel: ath: Country alpha2 being used: CO
Nov 17 12:26:15 Whitcomb kernel: ath: Regpair used: 0x10
Nov 17 12:26:15 Whitcomb kernel: ieee80211 phy0: Selected rate control algorithm 'minstrel_ht'
Nov 17 12:26:15 Whitcomb kernel: ath5k: phy0: Atheros AR5212 chip found (MAC: 0x56, PHY: 0x41)
Nov 17 12:26:15 Whitcomb kernel: ath5k: phy0: RF2112B 2GHz radio found (0x46)
Nov 17 12:26:15 Whitcomb kernel: ACPI: PCI Interrupt Link [ALKC] enabled at IRQ 22
Nov 17 12:26:15 Whitcomb kernel: snd_via82xx 0000:00:11.5: setting latency timer to 64
Nov 17 12:26:15 Whitcomb kernel: Adding 3903788k swap on /dev/sda2. Priority:-1 extents:1 across:3903788k
Nov 17 12:26:15 Whitcomb kernel: ip_tables: (C) 2000-2006 Netfilter Core Team
Nov 17 12:26:15 Whitcomb kernel: nf_conntrack version 0.5.0 (16384 buckets, 65536 max)
Nov 17 12:26:15 Whitcomb kernel: ip6_tables: (C) 2000-2006 Netfilter Core Team
Nov 17 12:26:15 Whitcomb systemd-logind[229]: Watching system buttons on /dev/input/event4 (Power Button)
Nov 17 12:26:15 Whitcomb systemd-logind[229]: Watching system buttons on /dev/input/event2 (Power Button)
Nov 17 12:26:15 Whitcomb systemd-logind[229]: Watching system buttons on /dev/input/event3 (Sleep Button)
Nov 17 12:26:16 Whitcomb systemd[1]: PID file /run/deluge/deluged.pid not readable (yet?) after start.
Nov 17 12:26:16 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activating via systemd: service name='org.bluez' unit='dbus-org.bluez.service'
Nov 17 12:26:16 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activation via systemd failed for unit 'dbus-org.bluez.service': Unit dbus-org.bluez.service failed to load: No such file or directory. See system logs and 'systemctl status dbus-org.bluez.service' for details.
Nov 17 12:26:16 Whitcomb dbus[232]: [system] Activating via systemd: service name='org.bluez' unit='dbus-org.bluez.service'
Nov 17 12:26:16 Whitcomb dbus[232]: [system] Activation via systemd failed for unit 'dbus-org.bluez.service': Unit dbus-org.bluez.service failed to load: No such file or directory. See system logs and 'systemctl status dbus-org.bluez.service' for details.
Nov 17 12:26:16 Whitcomb systemd[1]: Started Network Manager.
Nov 17 12:26:16 Whitcomb systemd[1]: Starting Network.
Nov 17 12:26:16 Whitcomb systemd[1]: Reached target Network.
Nov 17 12:26:16 Whitcomb systemd[1]: Starting Network Time Service...
Nov 17 12:26:16 Whitcomb systemd[1]: Starting Mount Samba Shares...
Nov 17 12:26:16 Whitcomb systemd[1]: Started Mount Samba Shares.
Nov 17 12:26:17 Whitcomb systemd[1]: Started Deluge Daemon.
Nov 17 12:26:17 Whitcomb systemd[1]: Started Network Time Service.
Nov 17 12:26:17 Whitcomb systemd[1]: Starting Multi-User.
Nov 17 12:26:17 Whitcomb systemd[1]: Reached target Multi-User.
Nov 17 12:26:17 Whitcomb systemd[1]: Starting Graphical Interface.
Nov 17 12:26:17 Whitcomb systemd[1]: Reached target Graphical Interface.
Nov 17 12:26:17 Whitcomb systemd[1]: Starting Update UTMP about System Runlevel Changes...
Nov 17 12:26:17 Whitcomb systemd[1]: Started Update UTMP about System Runlevel Changes.
Nov 17 12:26:17 Whitcomb systemd[1]: Startup finished in 4s 827ms 48us (kernel) + 20s 199ms 872us (userspace) = 25s 26ms 920us.
Nov 17 12:26:19 Whitcomb kernel: fuse init (API version 7.20)
Nov 17 12:26:19 Whitcomb systemd[1]: Mounting FUSE Control File System...
Nov 17 12:26:19 Whitcomb systemd[1]: Mounted FUSE Control File System.
Nov 17 12:26:19 Whitcomb gdm-simple-slave[311]: WARNING: Failed to give slave programs access to the display. Trying to proceed.
Nov 17 12:26:19 Whitcomb kernel: nf_conntrack: automatic helper assignment is deprecated and it will be removed soon. Use the iptables CT target to attach helpers instead.
Nov 17 12:26:20 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activating via systemd: service name='org.freedesktop.Accounts' unit='accounts-daemon.service'
Nov 17 12:26:20 Whitcomb dbus[232]: [system] Activating via systemd: service name='org.freedesktop.Accounts' unit='accounts-daemon.service'
Nov 17 12:26:20 Whitcomb systemd[1]: Starting Accounts Service...
Nov 17 12:26:20 Whitcomb accounts-daemon[371]: started daemon version 0.6.25
Nov 17 12:26:20 Whitcomb dbus[232]: [system] Successfully activated service 'org.freedesktop.Accounts'
Nov 17 12:26:20 Whitcomb dbus-daemon[232]: dbus[232]: [system] Successfully activated service 'org.freedesktop.Accounts'
Nov 17 12:26:20 Whitcomb systemd[1]: Started Accounts Service.
Nov 17 12:26:20 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activating service name='org.freedesktop.nm_dispatcher' (using servicehelper)
Nov 17 12:26:20 Whitcomb dbus[232]: [system] Activating service name='org.freedesktop.nm_dispatcher' (using servicehelper)
Nov 17 12:26:20 Whitcomb dbus-daemon[232]: dbus[232]: [system] Successfully activated service 'org.freedesktop.nm_dispatcher'
Nov 17 12:26:20 Whitcomb dbus[232]: [system] Successfully activated service 'org.freedesktop.nm_dispatcher'
Nov 17 12:26:20 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activating via systemd: service name='org.freedesktop.ConsoleKit' unit='console-kit-daemon.service'
Nov 17 12:26:20 Whitcomb dbus[232]: [system] Activating via systemd: service name='org.freedesktop.ConsoleKit' unit='console-kit-daemon.service'
Nov 17 12:26:20 Whitcomb systemd[1]: Starting Console Manager...
Nov 17 12:26:21 Whitcomb console-kit-daemon[376]: missing action
Nov 17 12:26:21 Whitcomb dbus-daemon[232]: dbus[232]: [system] Successfully activated service 'org.freedesktop.ConsoleKit'
Nov 17 12:26:21 Whitcomb dbus[232]: [system] Successfully activated service 'org.freedesktop.ConsoleKit'
Nov 17 12:26:21 Whitcomb systemd[1]: Started Console Manager.
Nov 17 12:26:21 Whitcomb systemd-logind[229]: New session 1 of user gdm.
Nov 17 12:26:21 Whitcomb systemd-logind[229]: Linked /tmp/.X11-unix/X0 to /run/user/120/X11-display.
Nov 17 12:26:25 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activating via systemd: service name='org.freedesktop.UPower' unit='upower.service'
Nov 17 12:26:25 Whitcomb dbus[232]: [system] Activating via systemd: service name='org.freedesktop.UPower' unit='upower.service'
Nov 17 12:26:25 Whitcomb systemd[1]: Starting Daemon for power management...
Nov 17 12:26:25 Whitcomb dbus-daemon[232]: dbus[232]: [system] Successfully activated service 'org.freedesktop.UPower'
Nov 17 12:26:25 Whitcomb dbus[232]: [system] Successfully activated service 'org.freedesktop.UPower'
Nov 17 12:26:25 Whitcomb systemd[1]: Started Daemon for power management.
Nov 17 12:26:27 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activating via systemd: service name='org.freedesktop.RealtimeKit1' unit='rtkit-daemon.service'
Nov 17 12:26:28 Whitcomb dbus-daemon[232]: dbus[232]: [system] Successfully activated service 'org.freedesktop.RealtimeKit1'
Nov 17 12:26:27 Whitcomb dbus[232]: [system] Activating via systemd: service name='org.freedesktop.RealtimeKit1' unit='rtkit-daemon.service'
Nov 17 12:26:28 Whitcomb dbus[232]: [system] Successfully activated service 'org.freedesktop.RealtimeKit1'
Nov 17 12:26:28 Whitcomb rtkit-daemon[524]: Successfully called chroot.
Nov 17 12:26:28 Whitcomb rtkit-daemon[524]: Successfully dropped privileges.
Nov 17 12:26:28 Whitcomb rtkit-daemon[524]: Successfully limited resources.
Nov 17 12:26:28 Whitcomb rtkit-daemon[524]: Running.
Nov 17 12:26:28 Whitcomb rtkit-daemon[524]: Canary thread running.
Nov 17 12:26:28 Whitcomb rtkit-daemon[524]: Watchdog thread running.
Nov 17 12:26:28 Whitcomb rtkit-daemon[524]: Successfully made thread 523 of process 523 (/usr/bin/pulseaudio) owned by '120' high priority at nice level -11.
Nov 17 12:26:28 Whitcomb rtkit-daemon[524]: Supervising 1 threads of 1 processes of 1 users.
Nov 17 12:26:28 Whitcomb pulseaudio[523]: [pulseaudio] sink.c: Default and alternate sample rates are the same.
Nov 17 12:26:29 Whitcomb pulseaudio[523]: [pulseaudio] source.c: Default and alternate sample rates are the same.
Nov 17 12:26:29 Whitcomb dbus[232]: [system] Activating via systemd: service name='org.bluez' unit='dbus-org.bluez.service'
Nov 17 12:26:29 Whitcomb dbus[232]: [system] Activation via systemd failed for unit 'dbus-org.bluez.service': Unit dbus-org.bluez.service failed to load: No such file or directory. See system logs and 'systemctl status dbus-org.bluez.service' for details.
Nov 17 12:26:29 Whitcomb pulseaudio[523]: [pulseaudio] bluetooth-util.c: org.bluez.Manager.ListAdapters() failed: org.freedesktop.systemd1.LoadFailed: Unit dbus-org.bluez.service failed to load: No such file or directory. See system logs and 'systemctl status dbus-org.bluez.service' for details.
Nov 17 12:26:30 Whitcomb kernel: [UFW BLOCK] IN=eth0 OUT= MAC=00:19:db:6a:70:49:00:18:74:eb:98:00:08:00 SRC=158.181.47.4 DST=131.215.169.100 LEN=129 TOS=0x00 PREC=0x00 TTL=108 ID=9372 PROTO=UDP SPT=6881 DPT=50753 LEN=109
Nov 17 12:26:27 Whitcomb systemd[1]: Starting RealtimeKit Scheduling Policy Service...
Nov 17 12:26:28 Whitcomb systemd[1]: Started RealtimeKit Scheduling Policy Service.
Nov 17 12:26:30 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activating via systemd: service name='org.bluez' unit='dbus-org.bluez.service'
Nov 17 12:26:30 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activation via systemd failed for unit 'dbus-org.bluez.service': Unit dbus-org.bluez.service failed to load: No such file or directory. See system logs and 'systemctl status dbus-org.bluez.service' for details.
Nov 17 12:26:30 Whitcomb kernel: EXT4-fs (sda1): re-mounted. Opts: commit=0
Nov 17 12:26:34 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activating via systemd: service name='org.freedesktop.UDisks2' unit='udisks2.service'
Nov 17 12:26:34 Whitcomb dbus[232]: [system] Activating via systemd: service name='org.freedesktop.UDisks2' unit='udisks2.service'
Nov 17 12:26:34 Whitcomb systemd[1]: Starting Disk Manager...
Nov 17 12:26:34 Whitcomb udisksd[566]: udisks daemon version 2.0.0 starting
Nov 17 12:26:35 Whitcomb dbus-daemon[232]: dbus[232]: [system] Successfully activated service 'org.freedesktop.UDisks2'
Nov 17 12:26:35 Whitcomb dbus[232]: [system] Successfully activated service 'org.freedesktop.UDisks2'
Nov 17 12:26:35 Whitcomb systemd[1]: Started Disk Manager.
Nov 17 12:26:35 Whitcomb udisksd[566]: Acquired the name org.freedesktop.UDisks2 on the system message bus
Nov 17 12:26:37 Whitcomb polkitd[315]: Registered Authentication Agent for unix-session:1 (system bus name :1.37 [gnome-shell --mode=gdm], object path /org/freedesktop/PolicyKit1/AuthenticationAgent, locale en_US.UTF-8)
Nov 17 12:26:37 Whitcomb dbus-daemon[232]: dbus[232]: [system] Rejected send message, 2 matched rules; type="method_call", sender=":1.37" (uid=120 pid=541 comm="gnome-shell --mode=gdm ") interface="org.freedesktop.DBus.Properties" member="GetAll" error name="(unset)" requested_reply="0" destination=":1.14" (uid=0 pid=376 comm="/usr/sbin/console-kit-daemon --no-daemon ")
Nov 17 12:26:37 Whitcomb dbus[232]: [system] Rejected send message, 2 matched rules; type="method_call", sender=":1.37" (uid=120 pid=541 comm="gnome-shell --mode=gdm ") interface="org.freedesktop.DBus.Properties" member="GetAll" error name="(unset)" requested_reply="0" destination=":1.14" (uid=0 pid=376 comm="/usr/sbin/console-kit-daemon --no-daemon ")
Nov 17 12:27:06 Whitcomb systemd[1]: Starting File System Check on /dev/sdb1...
Nov 17 12:27:07 Whitcomb systemd-fsck[582]: /dev/sdb1: clean, 157018/24420352 files, 88519245/97677200 blocks
Nov 17 12:27:07 Whitcomb systemd[1]: Started File System Check on /dev/sdb1.
Nov 17 12:27:07 Whitcomb systemd[1]: Mounting /home...
Nov 17 12:27:07 Whitcomb systemd[1]: Mounted /home.
Nov 17 12:27:07 Whitcomb kernel: EXT4-fs (sdb1): mounted filesystem with ordered data mode. Opts: (null)
Nov 17 12:27:13 Whitcomb gdm-password][594]: pam_unix(gdm-password:session): session opened for user gregory by (unknown)(uid=0)
Nov 17 12:27:13 Whitcomb gdm-password][594]: pam_ck_connector(gdm-password:session): nox11 mode, ignoring PAM_TTY :0
Nov 17 12:27:13 Whitcomb systemd-logind[229]: New session 2 of user gregory.
Nov 17 12:27:13 Whitcomb systemd-logind[229]: Linked /tmp/.X11-unix/X0 to /run/user/1001/X11-display.
Nov 17 12:27:13 Whitcomb gnome-session[443]: WARNING: Detected that screensaver has left the bus
Nov 17 12:27:13 Whitcomb gnome-session[443]: CRITICAL: gsm_manager_set_phase: assertion `GSM_IS_MANAGER (manager)' failed
Nov 17 12:27:13 Whitcomb polkitd[315]: Unregistered Authentication Agent for unix-session:1 (system bus name :1.37, object path /org/freedesktop/PolicyKit1/AuthenticationAgent, locale en_US.UTF-8) (disconnected from bus)
Nov 17 12:27:13 Whitcomb gdm-simple-slave[311]: WARNING: Failed to remove slave program access to the display. Trying to proceed.
Nov 17 12:27:15 Whitcomb gnome-keyring-daemon[601]: Gkm: using old keyring directory: /home/gregory/.gnome2/keyrings
Nov 17 12:27:15 Whitcomb gnome-keyring-daemon[601]: Gkm: using old keyring directory: /home/gregory/.gnome2/keyrings
Nov 17 12:27:16 Whitcomb rtkit-daemon[524]: Successfully made thread 666 of process 666 (/usr/bin/pulseaudio) owned by '1001' high priority at nice level -11.
Nov 17 12:27:16 Whitcomb rtkit-daemon[524]: Supervising 4 threads of 2 processes of 2 users.
Nov 17 12:27:16 Whitcomb pulseaudio[666]: [pulseaudio] sink.c: Default and alternate sample rates are the same.
Nov 17 12:27:16 Whitcomb pulseaudio[666]: [pulseaudio] source.c: Default and alternate sample rates are the same.
Nov 17 12:27:16 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activating via systemd: service name='org.bluez' unit='dbus-org.bluez.service'
Nov 17 12:27:16 Whitcomb dbus-daemon[232]: dbus[232]: [system] Activation via systemd failed for unit 'dbus-org.bluez.service': Unit dbus-org.bluez.service failed to load: No such file or directory. See system logs and 'systemctl status dbus-org.bluez.service' for details.
Nov 17 12:27:16 Whitcomb dbus[232]: [system] Activating via systemd: service name='org.bluez' unit='dbus-org.bluez.service'
Nov 17 12:27:16 Whitcomb dbus[232]: [system] Activation via systemd failed for unit 'dbus-org.bluez.service': Unit dbus-org.bluez.service failed to load: No such file or directory. See system logs and 'systemctl status dbus-org.bluez.service' for details.
Nov 17 12:27:16 Whitcomb pulseaudio[666]: [pulseaudio] bluetooth-util.c: org.bluez.Manager.ListAdapters() failed: org.freedesktop.systemd1.LoadFailed: Unit dbus-org.bluez.service failed to load: No such file or directory. See system logs and 'systemctl status dbus-org.bluez.service' for details.
Nov 17 12:27:17 Whitcomb gnome-session[603]: Gtk-WARNING: Failed to parse /home/gregory/.config/gtk-3.0/settings.ini: Key file does not have group 'Settings'
Nov 17 12:27:19 Whitcomb gnome-session[603]: WARNING: Failed to start app: Unable to start application: Failed to execute child process "gnome-do" (No such file or directory)
Nov 17 12:27:19 Whitcomb gnome-session[603]: WARNING: Failed to start app: Unable to start application: Failed to execute child process "JRSST" (No such file or directory)
Nov 17 12:27:19 Whitcomb gnome-session[603]: WARNING: Failed to start app: Unable to start application: Failed to execute child process "tasque" (No such file or directory)
Nov 17 12:27:19 Whitcomb rtkit-daemon[524]: Successfully made thread 705 of process 705 (/usr/bin/pulseaudio) owned by '1001' high priority at nice level -11.
Nov 17 12:27:19 Whitcomb rtkit-daemon[524]: Supervising 5 threads of 3 processes of 2 users.
Nov 17 12:27:19 Whitcomb pulseaudio[705]: [pulseaudio] pid.c: Daemon already running.
Nov 17 12:27:26 Whitcomb goa[766]: goa-daemon version 3.6.2 starting [main.c:112, main()]
Nov 17 12:27:26 Whitcomb dbus-daemon[232]: dbus[232]: [system] Rejected send message, 2 matched rules; type="method_call", sender=":1.55" (uid=1001 pid=672 comm="/usr/bin/gnome-shell ") interface="org.freedesktop.DBus.Properties" member="GetAll" error name="(unset)" requested_reply="0" destination=":1.14" (uid=0 pid=376 comm="/usr/sbin/console-kit-daemon --no-daemon ")
Nov 17 12:27:26 Whitcomb dbus[232]: [system] Rejected send message, 2 matched rules; type="method_call", sender=":1.55" (uid=1001 pid=672 comm="/usr/bin/gnome-shell ") interface="org.freedesktop.DBus.Properties" member="GetAll" error name="(unset)" requested_reply="0" destination=":1.14" (uid=0 pid=376 comm="/usr/sbin/console-kit-daemon --no-daemon ")
Nov 17 12:27:26 Whitcomb gnome-keyring-daemon[601]: keyring alias directory: /home/gregory/.gnome2/keyrings
Nov 17 12:27:27 Whitcomb polkitd[315]: Registered Authentication Agent for unix-session:2 (system bus name :1.55 [/usr/bin/gnome-shell], object path /org/freedesktop/PolicyKit1/AuthenticationAgent, locale en_US.utf8)
Nov 17 12:27:30 Whitcomb kernel: end_request: I/O error, dev fd0, sector 0
Nov 17 12:27:30 Whitcomb kernel: end_request: I/O error, dev fd0, sector 0
Nov 17 12:27:33 Whitcomb systemd-logind[229]: Removed session 1.
I tried using gnome-tweak tool to fiddle around with the fonts, but that didn't help, none of the fonts would render correctly. Cantarell, which I'm assuming is the gnome-shell font, is still in /etc/fonts/conf.avail, so I don't think that the font file itself went missing. I made the fontconfig update a while ago, and that didn't cause any problems.
I also heard that there were problems with xorg-server, so I downgraded xorg-server, pixman, and cairo to their previous versions, but that didn't help either. EDIT: I've also done a pacman -Syyf gnome-shell to try and reinstall gnome-shell. That also didn't work.
I've run out of things to try. If someone else was more familiar with the workings of gnome-shell fonts, or had a better idea of how to debug, I'd really appreciate it. Thank you.
UPDATE: I found that /etc/fonts/conf.avail/31-cantarell.conf existed, but was empty. After doing a pacman -Syyf cantarell-fonts, they went right back to normal!
Last edited by cactaur (2012-11-20 00:21:27)

Problem disappeared.
I'm not sure, but i think installing xf86-video-modesetting helped to fix this issue.
I had an error messages in /var/log/Xorg.0.log like this:
(EE) Failed to load module "modesetting" (module does not exist, 0)

[Solved] Gnome 3 Shell - Icons Missing After Update

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