SSDT Schema Compare keeps showing the same objects as different..

Hi,
When comparing a database to my project using Visual Studio 2012 SSDT I get several stored procedures marked as changed. The body of the procedures is identical, but two properties are highlighted as different when expanding the object:
IsSelf (false on the DB vs true on the project) and User (dbo on the DB, needs to be added to the project).
The procedures have the option "with execute as self" both in the database and in the project as part of the body.
I have not found what needs to be done so these differences are applied to the project and never appear again. Tried changing some options on the schema compare but didn't found one that help.
Some forum suggested dropping the objects and re-creating them but I don't want to loose the history of changes on TFS.
Any suggestions?

Hi Daniel,
Since you have posted this issue to the SSDT forum here:
http://social.msdn.microsoft.com/Forums/sqlserver/en-US/5c9c5c47-64ac-4af4-9104-c9500dc8cf52/ssdt-schema-compare-keeps-showing-the-same-objects-as-different?forum=ssdt#5c9c5c47-64ac-4af4-9104-c9500dc8cf52
I will move this thread to the Off-topic forum, thanks for your understanding.
Sincerely,
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