Sync Videos with iTunes from Aperture

I Switched from iPhoto to Aperture and liked it a lot. The first time I synced my pictures and videos to my iPhone all worked smoothly but yesterday after I synced again, my videos from my intelligent aperture folder was gone from my iPhone4 everything else was synced perfectly. I tried setting the flag for sync videos (in the sync pictures subfolder of iTunes ) off, sync , set it on and sync again. But the videos wont sync. I got 5 gb of free space on my iPhone for 1 gb of videos. So this can't be the reason. Could anyone help me please. I don't know how to solve this problem.
Thanks 

Problem Solved!!! Aperture says the file is made by the Iphone and compartible, but it isnt. After exporting, reincoding using HandBrake and importing the videos to Aperture solved the problem. After that the videos could be synced to the Iphone. Apple support wasnt any help.

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