TimeMachine "Preparing backup..." Causing application memory space warning.

Every night at the office, I run a script that rsyncs files from our production server to my local machine, as a backup just in case, and also until we get a git solution setup. I would then use Time Machine, setup on a partition on the main drive, to keep incremental backups of the files.
Here's the problem though. The initial backup, goes without a hitch. However, every time I run a new rsync, and then start a backup, when I come back the next morning, I find a window has popped up saying "Your Mac OS X startup disk has no more space available for application memory". The backup itself is only 50GB on a 1TB drive (the backup partition half that). I've had activity monitor open, and it looks like whenever backup is running, it takes up at least 2GB of real memory. I don't understand how it works with the initial backup, but the moment I run an rsync and backup the up to date version, it causes these issues.
Ideas?

Thanks, Klaus. No one in that discussion thread actually explains the meaning of this warning or what might cause it. It's quite possible that my friend will never see the same warning again, but it would be good to know what triggered the warning and what should be done about it beyond restarting the computer to delete the swap files.

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    The full message reads as, "
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    Tracking down a memory leak can be difficult, and it may come down to a process of elimination.
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    If one process (excluding "kernel_task") is using much more memory than all the others, that could be an indication of a leak. A better indication would be a process that continually grabs more and more real memory over time without ever releasing it. Here is an example of how it's done.
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