Transferring midi data from Atari to Mac.

Like many of the "older" hands here, I started sequencing on an Atari ST1040 and still have many old DD floppy-disks full of my songs in the old Emagic Notator (_.SON) format. Well I held on to the old Atari and it still works well but what I would love to do is get those songs into Logic Pro 8.
What I have found out and done so far is...
     - successfully exported a Notator song file to a midi file on the Atari.
     - successfully connected the Atari to my MacBook (using midi lead from Atari midi out, through M-Audio midisport USB into MacBook USB port.
     - successfully established communication between the two computers and transferred one midi file, ending up with a single midi track in Logic, containing (I think) most of the information, but all crammed into a single track.
What I haven't been able to do is enable proper sync between the two (I simply set Logic bpm to that of the Atari, pressed "record" in Logic and then "play" on the Atari). I can't seem to find this sync setting in Logic.
I am also unsure as to what to set the new track to in Logic as it seems to work in a limited way, whether I select "External Midi Instrument" or "External Sequencer". Common sense seems to suggest the latter, since Notator is indeed an external sequencer as far as the Mac is concerned.
So what I'm really trying to achieve here is:
     1. Proper sync so that the timing doesn't wander during transfer
     2. The same number of tracks in my original midi file, transferred  into Logic. (I tried enabling the right number of tracks, even setting the individual midi channels but it just record onto the first track and ignores the rest.)
Any suggestions as to what I'm doing wrong, what I need to do now or any help or advice as to how to get this to work properly would be most welcome.
Cheers!

I think you'd be better off just transferring the .son data file in it's raw form.  Anyway to get that midi info onto a more modern storage device and then load it into Logic that way?
I'm not sure what kind of useful data interfaces are possible on the Atari.
Original Emagic dudes probably have some suggestions as this would have been somewhat common a decade ago.
The midi porting seems to create a jumble rather than your segregated parts.

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