Trouble with 3d model's transparency in iBooks Author

I have a 3d model with transparency and while it is imported without problems, there's something wrong with the transparency rendering inside 3d widget.
I attach 3 screenshots to showcase the problem.
The first two are from the iBook in iPad while the third is how the model shows in the 3d programs vieport (correct transparency)
Any help would be greatly appreciated!
iPad 1
iPad 2
3d application viewport

We need WebGL

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