Unix Executable files within apple programs, problem???????????

Sometime ago i was using logic pro 7,and saving my project folders on an external drive,,,all of my folders turned into EXE files and couldnt be read,,
Now ive wiped my internal drive,,reloaded the install disks,,used disk warrior,
If i highlight any icon such as logic,iDVD,garage band,,or any other,,"show package contents" ???? click contents then open the "MacOS" folder,, A black Unix Executable file is here,,,,in all programs,!!!!!!!!!!
I have tried to find out if this is normal as i lost a huge amount of project folders,,,,but there is nothing or no one i can find to resolve this issue,
i would just like to feel safe as im not much of a computer wizard,,
anyone got an idea? yours confused,, steve

I have tried to find out if this is normal
Yes, it is.
(48530)

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