Updating to 10.5.8 has screwed up my iMail

Have just updated my iMac (1.83 GHz intel iMac) to OSX 10.5.8 and all seems really good apart from my iMail.
Am now unable to open Preferences in iMail, hear that I have new messages but can't find them and have lost JUNK folder in the list of folders.
Any idea how I can repair my iMail???
HELP!

You also might want to try rebuilding your mailboxes. Choose the "Mailbox" item on Mail's menubar and select "Rebuild" at the bottom of the dropdown menu. If "Rebuild" is grayed out, that would suggest that you have more than one account, so you would need to click on the ▶ to the left of "Inbox" in your "Mailboxes" so that the inboxes expand to show the actual mail acounts. Then select each account's mailbox one at a time and choose "Rebuild." Repeat for "Sent," "Drafts," etc.
As a future point of reference, when future software updates are posted, rather than install the incremental updates via Software Update, you might want to instead google, for instance, "10.5.8 combo update" and download it from the Apple site and (re)apply the combo update, even though you might be going from "10.x.y-1" to "10.x.y." Over the years, I've read enough complaints in these forums about stuff getting broken with updates and successful recommendations to use the combo updates regardless, that that is how I have been doing my software updates for years with no problems. Also, I always run disk utility verify disk (and repair from installer DVD or bootable clone, if necessary) and disk utility repair permissions before applying combo updates. If you do all those things, I would claim that you will run a significantly lesser risk of running into problems like this.
If none of these things help you out, and if ALL of your accounts are IMAP accounts, you could try quitting Mail, then going into your home folder's Library, select the "Mail" and "Mail Downloads" folders, control-click on them and choose "compress" (this is so you don't lose anything in case things go wrong). Then, since you can't get into your Mail's preferences, you are going to have to figure out what all your accounts' settings are: smtp server name and port, SSL or not, same for IMAP, then trash your Library/Preferences/com.apple.mail and relaunch Mail. It will look like a first run of Mail and you will have to recreate all of the email accounts' information. If any of your accounts are POP, this procedure may need to be modified a bit in order to protect and/or recover your email; I don't have any POP accounts so can't really speak to that. Others here could, though. But hopefully, you wouldn't have to go to these extremes.
PS - your profile indicates you are running Tiger, but this is a Leopard mail forum; I assume that your profile is just out of date and that you are in fact running Leopard?

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