Variable becomes invalid during loop (CS6 based)

First off I know that CC fixed this, but unfortunately my hands are tied and I have to use CS6 for this process. The script below is built to allow user to select precomp layers within a master comp. It then strips each precomp down to just itself and then the project is reduced to just the master comp and associated assets. It's actually inspired by Jeff Almasol's script he made for me years ago. I've just customized my own variation due to an issue in CS6 with the Reduce Project function. The issue arrising is that the loop goes off and processes the first selected precomp properly, but the master comp variable becomes invalid upon the second precomp processed. The script involves saving the project file and reopening the main source project during the loop process. Any thoughts as to why the variable is becoming invalid? The lines marked BOLD and ITALIC are the trouble spots.
     function compToProjectsScript(thisObj){
          try{
               var masterComp, curItem, selLayerIndices, selLayerIndicesLength, curLayer, curLayerName, saveFolder, newFileInfo, curLayerIndex, folderString, allItems;
               ///FUNCTIONS
               //retrieveSelectedLayersIndex
               function retrieveSelectedLayersIndex(compObj){
                    var selLayers, selLayersLength, layerIndex;
                    layerIndex = new Array();
                    selLayers = compObj.selectedLayers;
                    selLayersLength = selLayers.length;
                    for(var l=0; l<selLayersLength; l++){
                         if(selLayers[l].source instanceof CompItem){
                              layerIndex.push(selLayers[l].index);
                    return layerIndex;
               //reduceCompToLayer
               function reduceCompToLayer(layerObj, compObj){
                    var layerCount = compObj.numLayers;
                    var lastLayer = compObj.layer(layerCount);
                    layerObj.moveBefore(lastLayer);
                    for(var i=1; i<=layerCount-2; i++){
                         firstLayerLocked = compObj.layer(1).locked;
                         if(firstLayerLocked == true){
                              firstLayerLocked = false;
                              compObj.layer(1).remove();
                         }else{
                              compObj.layer(1).remove();
               //retrieveParentCompIndexNum
               function retrieveParentCompIndexNum(){
                    var proj, openedComp, parentComp, itemcount;
                    proj = app.project;
                    openedComp = proj.activeItem;
                    itemcount = proj.numItems;
                    if(openedComp instanceof CompItem){
                         parentComp = {'name': openedComp.name, 'id': openedComp.id};
                         for(var i=1; i<=itemcount; i++){
                              if(proj.item(i).name == parentComp.name && proj.item(i).id == parentComp.id){
                                   return i;
              masterComp = app.project.item(retrieveParentCompIndexNum());     //VARIABLE SET
               selLayerIndices = retrieveSelectedLayersIndex(masterComp);
               selLayerIndicesLength = selLayerIndices.length;
               var curProjFile = app.project.file;
               if(curProjFile != null){
                    saveFolder = Folder.selectDialog("Choose a \"save to\" folder.");
                    if(saveFolder != null){
                         folderString = Folder.decode(saveFolder).toString();
                         app.project.save(new File(folderString + "/_Duplicate_" + curProjFile.name));
                         var dupFile = app.project.file;
                         app.beginUndoGroup("compToProject");
                              for(var i=0; i<selLayerIndicesLength; i++){
                                        app.beginSuppressDialogs();
                                             curLayerIndex = selLayerIndices[i];
                                             curLayer = masterComp.layer(curLayerIndex);     //BECOMES INVALID ON SECOND PASS
                                             curLayerName = curLayer.name;
                                             reduceCompToLayer(curLayer, masterComp);
                                             app.project.reduceProject(masterComp);
                                             newFileInfo = folderString + "/" + curLayerName + ".aep";
                                             app.project.save(new File(newFileInfo));
                                        app.endSuppressDialogs(true);
                                   app.open(curProjFile);
                         app.endUndoGroup();
                         writeLn("All done.");
               }else{
                    alert("Save project first, then try again.");
          }catch(err){alert("Error at line #" + err.line.toString() + "\r" + err.toString());}
     compToProjectsScript(this);

Here's that final setup I went with:
//START
     function compToProjectsScript(thisObj){
          try{
               var masterComp, curItem, selLayerIndices, selLayerIndicesLength, curLayer, curLayerName, saveFolder, newFileInfo, curLayerIndex, folderString, allItems;
               ///FUNCTIONS
               //retrieveSelectedLayersIndex
               function retrieveSelectedLayersIndex(compObj){
                    var selLayers, selLayersLength, layerIndex;
                    layerIndex = new Array();
                    selLayers = compObj.selectedLayers;
                    selLayersLength = selLayers.length;
                    for(var l=0; l<selLayersLength; l++){
                         if(selLayers[l].source instanceof CompItem){
                              layerIndex.push(selLayers[l].index);
                    return layerIndex;
               //reduceCompToLayer
               function reduceCompToLayer(layerObj, compObj){
                    var layerCount = compObj.numLayers;
                    var lastLayer = compObj.layer(layerCount);
                    layerObj.moveBefore(lastLayer);
                    for(var i=1; i<=layerCount-2; i++){
                         firstLayerLocked = compObj.layer(1).locked;
                         if(firstLayerLocked == true){
                              compObj.layer(1).locked = false;
                              compObj.layer(1).remove();
                         }else{
                              compObj.layer(1).remove();
               //retrieveParentCompIndexNum
               function retrieveParentCompIndexNum(){
                    var proj, openedComp, parentComp, itemcount;
                    proj = app.project;
                    openedComp = proj.activeItem;
                    itemcount = proj.numItems;
                    if(openedComp instanceof CompItem){
                         parentComp = {'name': openedComp.name, 'id': openedComp.id};
                         for(var i=1; i<=itemcount; i++){
                              if(proj.item(i).name == parentComp.name && proj.item(i).id == parentComp.id){
                                   return i;
               compIndex = retrieveParentCompIndexNum();
               masterComp = app.project.item(compIndex);
               selLayerIndices = retrieveSelectedLayersIndex(masterComp);
               selLayerIndicesLength = selLayerIndices.length;
               var curProjFile = app.project.file;
               if(curProjFile != null){
                    saveFolder = Folder.selectDialog("Choose a \"save to\" folder.");
                    if(saveFolder != null){
                         folderString = Folder.decode(saveFolder).toString();
                         app.project.save(new File(folderString + "/_Duplicate_" + curProjFile.name));
                         var dupFile = app.project.file;
                         app.beginUndoGroup("compToProject");
                              for(var i=0; i<selLayerIndicesLength; i++){
                                        app.beginSuppressDialogs();
                                             sourceComp = app.project.activeItem;
                                             curLayerIndex = selLayerIndices[i];
                                             curLayer = sourceComp.layer(curLayerIndex);
                                             curLayerName = curLayer.name;
                                             reduceCompToLayer(curLayer, sourceComp);
                                             app.project.reduceProject(sourceComp);
                                             newFileInfo = folderString + "/" + curLayerName + ".aep";
                                             app.project.save(new File(newFileInfo));
                                        app.endSuppressDialogs(true);
                                   app.open(dupFile);
                         app.endUndoGroup();
                         writeLn("All done.");
               }else{
                    alert("Save project first, then try again.");
          }catch(err){alert("Error at line #" + err.line.toString() + "\r" + err.toString());}
     compToProjectsScript(this);
//END

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