10.4.7 update fine - prompted for Pro Apps Update 2006-01 again

I ran the 10.4.7 Update without a hitch. Everything works fine. However, when running SU again to see if 10.4.7 is a multiple update, SU now wants me to install the 2006-01 Pro Apps update again. I'm sure I installed it prior to 10.4.7. This makes me nervous. Any advice anyone?
MacBook Pro

Can you mount the drive from another computer via FireWire Target Disk Mode? then repair the drive; delete cache folders etc.
From single user mode you could also try to rename
~/Library/Preferences to another name.
MacFixit: Repairing Permissions
General Troubleshooting permissions
Troubleshooting Mac OS X
Insufficient disk space or RAM
Installing Software Update
Advice on Archive & Install

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