2 Recovered folders appears and not all photos syncing

Using iPhoto 9.4.1 on my MacBook Air running Mountain Lion V10.8.2. Syncing with iPhone 4S 32GB on iOS6. Syncing with latest iTunes version.
When I choose to sync ALL photos with my iPhone in iTunes it tells me there are 18894 photos to sync. There are actually 18,923 photos in my iPhoto library. And then when it syncs to my iPhone only about half of those go on there.
When I choose to select SOME albums to sync, two folders are listed titled "Recovered Folder" only one of them has one item in it. These folders do not exist in my iPhoto library and never have. No idea where they have come from.
Also when I choose to select SOME albums to sync, another folder called LastNMonths also appears.
In the end all I want is all my photos on my iPhone. Same amount thats in my iPhoto album.
I have deleted the iPod Photo Cache. I have removed all photos. I have restored the iPhone many times.

I am getting events for photostream months, but these don't include everything either.
Here's a basic scenario of what's happening. Let's say I have 5 photos (not videos) that I took on my iPhone. All of them get downloaded in the photostream category on iPhoto on my iMac. However, when I sync my iPhone, only 3 out of the 5 photos end up going into events. If I force import them to iPhoto, it asks if I want to replace the dupes, because they are in my photo stream.
I can't figure out what criteria is used to determine this- it really makes no sense to me.

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