2012 R2 Need help understanding profiles/run as accounts

I'm new to SCOM, just installed 2012 R2, everything is set up.  Basically only 2 servers.
I've installed management packs for base OS, IIS, AD, Lync 2013, SQL.
The first thing after that I set up a run as account for email notifications.  In doing so I used an AD account but chose less secure.
I then created a notification channel, subscribers, and subscriptions.  It worked and I was getting emails because I bound by Notification action account to the notification account profile.  The problem in doing so is that now I got alerts on all
my DCs that the run as account does not exist on the target machine.  So in choosing "less secure" or "all targeted objects" on the run as account, it is trying to use that account for my notifications instead of the default.
So I started messing around with things, such as the run as accounts used for the notification account profile but things are just not working as expected.
Also for some reason the 3 Microsoft Lync Server Profiles have the network server windows account bound to them which I can't remove.
So in the end here is what I did for email alerts.  We have a seperate anonymous SMTP relay set up.  I created a new run as account called "notification action account" and chose an newly created AD account which is just a domain
user.  Inside of the distribution tab, I selected more secure but added the SCOM server itself because I don't have the agent installed on our open SMTP relay and it allows internal anonymous email. Under the Profiles, Notification Account I set the run
as account to the "Notification action account" I created, but still selected all targeted objects.  That seems to be working and I'm not getting alerts from my DCs about the account doesn't exist on the target. 
I'm just not understanding why if you don't specify more secure and put in specific servers, it trys to use that account to connect to everything instead of using the default.

Hi,
If you choose to distribute the Run as account to all the agents, all the workflows on the agents associates with this profile will use this account.
http://technet.microsoft.com/en-us/library/hh431855.aspx
http://blogs.technet.com/b/kevinholman/archive/2010/09/08/configuring-run-as-accounts-and-profiles-in-r2-a-sql-management-pack-example.aspx
Juke Chou
TechNet Community Support

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