3.5.1 Database Repair Issues

My Aperture 3.5.1 Image Library (Managed, Drobo 5D, Thunderbolt Connected, 3.75 TB, 120K images) is asking for repair.  When selected, a message pops up saying "This Aperture Library was modified by a newer version of Aperture.  Repair using this version may result in loss of data/features only available in the newer version."
Is it safe to let the application do a repair?  There are instabilities showing up and I would like to have a healthy library.  (In the process of breaking up the Main Library into smaller separate pieces and I don't want corrupted data replicating into the new libraries.
ACE

"This Aperture Library was modified by a newer version of Aperture.  Repair using this version may result in loss of data/features only available in the newer version."
Aperture 3.5.1 is the newest version, so repairing with Aperture 3.5.1 should not cause any edits to be lost. I have seen this warning for two different reasons:
It can occur, when there are two different versions of Aperture installed and accidentally the older Aperture version has been launched, for example from a connected backup drive. When Aperture has been launched, check the version of the running application, by ctrl-clicking the Dock icon and using the option "Show in Finder".  Has your Aperture 3.5.1 in Applications been launched or a different version?  If not, launch Aperture directly from the Applications folder, while holding down the alt/options key to select your current Aperture library.
A second possible reason for this error message: If your Aperture library has been opened in iPhoto, occasionally the version numbers get mixed up. Then rebuilding the Aperture library with Aperture 3.5.1 should help.
In any case, don't repair or rebuild without making a backup copy of your Aperture library, just in case.

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