30 Second Audio Render problem in Adobe Media Encoder?

I've been trying a few things out to fix this, but no luck.
Ok, so I export videos with a audio spectrums where audio would be necessary. Now I want to do this all in After Effects without editing the Audio in in Premiere Pro. After Effects does not render in H.264. So I send it Adobe Media Encoder. When I export to AME, the first 30 seconds is mute, without fail. only on AME though. I can export straight through AE with .mov and it works fine. but I don't like doing that with the large filesize. I also did this with WebM. Audio does not export for 30 seconds on AME.
I like to send everything to AME. So if I have to go to premiere to fix audio I will. so after fixing everything I send it over to AME and let it export. for some reason, it WILL give me audio. Is there something wrong with my settings in AE or AME?
Everything is CC if that helps any

OK, give this a shot.
FAQ: Why are some codecs and sequence presets missing from my installation of Premiere Pro?

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