3GS on iOS 6 will not sync most of music via cable

I upgraded my 3GS to iOS 6, and most of my music will not sync via cable.  I can check it all in iTunes, but the space allocation bar in iTunes does not change (on iOS5 I only had 1G free, now I have 8 G free), but only about 1/4 shows up on the phone.  I did  full restore--no change.  I checked  fill free space with songs--no change.  Help!  It might be that only music bought from iTunes is syncing and music I ripped myself or bought from Amazon is not syncing--i.e. my enire pre-iphone collection.

Ok solved my own problem--but this is squirrely.  In itunes, at the bottom of the "Summary" tab for your phone, is an "Options" section.  For some reason, having  "Sync only checked songs and videos" checked here only allowed 47 of 1900 songs to sync--even if they were checked on the music tab.  Unchecking this box and managing music from the music tab alone fixed the issue.

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