4.6C to ECC 6.0 upgrade - Issue with Virsa Compliance Calibrator

The issue is that phase IS_SELECT during the PREPARE is not detecting VIRSA as an add-on. This of course will result in VIRSA not being upgraded and the system will be unstable ( note 989368 ). Also, I can't choose to delete the add-on either.
We installed the compliance calibrator before SAP purchased VIRSA. So, the tool was installed through transports, not SAINT. I assume this is why phase IS_SELECT is not seeing the tool.
Any ideas?
-Scott

Received a reply from SAP. Since VIRSA was installed through STMS the IS_SELECT phase will not see the add-on. I had to do the ECC 6 upgrade as normal and then install VIRSA 4.0 for SAP 700 systems through SAINT.
I had to clear SPDD and SPAU as much as possible for /VIRSA/* objects. However, there were six objects I could not clear. This did not cause any issues.
Notes 1006083 and 985617 are needed for this procedure.
Thanks for all the suggestions.
-Scott

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