5 mins+ to boot, can't repair disk

Hi
My 24" Core 2 Duo has started to experience problems when I power it up. I usually leave it on all the time, but recently when I restarted it, it took nearly 20 minutes to reach the login screen, and then at least 20 minutes to open the startup items.
I rebooted in Safe Mode successfully. I ran a Verify Disk on the startup disk using Disk Utility and it failed, recommending a Repair Disk. I booted from the install disk and ran Disk Utility. The start up disk is shown on the left but the volume "Macintosh HD" is not listed under it, so I am unable to run Repair Disk.
After reading http://support.apple.com/kb/TS1417, I am not sure that I should attempt to run fsck. In any case I am not sure how to boot into the command line.
I have also run the Apple Hardware Test twice which gave the following error codes:
4SNS/1/40000001:VGOR-10.832
4SNS/1/40000001:VGOR-10.789
I have also reset PRAM and NVRAM.
Other than the 5-10min boot up time, the machine appears to be working normally. The disk's S.M.A.R.T. Status is Verified but I really want to run Repair Disk, so that I know whether to replace the hard drive.
Any ideas?
Message was edited by: tinysausage

Dave, you may well be right in the long run, but I have managed to get it going again for now. Here's how:
I booted to command line in single user mode (command-S on startup) and ran fsck:
/sbin/fsck -fy
This gave an "invalid index key" error which fsck was unable to fix, despite running several times. A Google search of this error suggested that it is a pretty severe corruption of the directory catalog, and that total data loss was imminent. So I bought DiskWarrior and ran it on my MacBook connected by FireWire to the sick iMac in Target Disk mode. DW came up with lots of errors, and created a new "optimised catalog".
A reboot later, and voila!, the iMac boots up in under a minute. Now let's hope it lasts...

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