A Mac Pro Help Challenge.  I've never seen this before!

I am having a problem with a Mac Pro 2x3 GHz Quad-Core with 16 GB RAM 750 GB HD with an NVIDIA Quadro FX 4500.
The machine has had several problems. Including Illustrator loosing quick keys such as the ability for it to recognize when the SHIFT Key is pressed? Or the ability to quickly change from tool to tool.
It freezes from time to time.
When I shut it down, let the computer power cycle then start it up, I will see the small light on the 23" apple display blink 3 times rapidly then pause then repeat. I can only get the computer back up by pressing the power button for several seconds.
I've come back to the computer to see the RSS Visualizer screen saver blinking. It was strange.
And you really need to see this.
http://i87.photobucket.com/albums/k142/semilion/Picture2.png
That's a link to a kind of warping effect I get when opening or saving or utilizing any dialog window. I've never seen it occur before.
Can you guys/gals offer any help?
I can't go to apple support. It's my work computer and the IT people here are not Mac Geniuses. I am trying to get some ideas so that I could throw their way.

16 GB of RAM sounds great, but who ordered it? IT will usually buy the cheapest memory they can get. Try pulling any non-Apple memory and see if the problems go away. I hear the Mac Pro is pretty sensitive when it comes to memory.

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