A/V synced in project, but not upon rendering, CS3

Unfortunately, I'm still using CS3. Can't afford to upgrade yet.
Anyway, I have a mid-level computer system. I've got a video project that I did a couple years ago which is sort of like a music video in that I had to sync a lot of the video motions very carefully (to the frame) to look appropriate with the audio bed track. After the project was put together (in Premiere 7.0) and rendered, the project played perfectly in sync. I exported it at the time to a movie format (I think mpeg, if I remember correctly), and submitted the project, and everything was good. Still perfectly in sync. It even went up on YouTube and got several thousand views, and is still synced fine as a streamed video.
Anyway, I wanted to re-encode the video at a higher quality, so I imported the project into CS3, which converted it with no problems. I re-rendered in the computer, and everything is still in sync. However, I tried exporting and the finished product is NOT in sync anymore. Two other projects that I did at the same time, with the same settings, did not exhibit this problem. The only significant difference that I can see between this project and the one a few years ago is that I am currently trying to export as a .MOV using H264. I would have figured that would be the problem, except that the other two videos that I just exported to the same format did NOT experience the un-syncing.
Very confused, would appreciate any thoughts. I'm currently trying to export into a variety of other formats to see if I can get any to work and stay properly synced.

Hey, that WAS pretty quick!
Now, I just hope that one of the other H.264 CODEC's works as well for you, as they have for many others.
Good luck,
Hunt

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