Accidentally Deleted Junk Mail

My Mail account is set up to automatically delete items in the Junk folder after one day. Sadly there were a couple of mails that WERE NOT junk and they have now been automatically deleted. How do I retreive them please?
I note that junk mails neither go into the Trash in Mail, nor into the main Trash bin in the Dock. Where do deleted emails actually go?
Thanks
Andy

Messages automatically erased from Junk according to your settings don’t go anywhere. What would be the point of moving them to the Trash? Mail is just doing what you’ve told it to do, i.e. erase the messages after the specified amount of time.
There is a small chance that the messages haven't actually been erased, though.
For each mailbox, Mail 1.x stores messages sequentially in an mbox file within the *.mbox package associated with the mailbox -- you can see the files contained in an *.mbox package by ctrl-cliking on it in the Finder and choosing Show Package Contents from the contextual menu that appears.
When a message is removed from a mailbox in Mail 1.x, the actual message may be completely erased from the mbox file (in which case it cannot be recovered), or it may remain there just marked for deletion in one of the other supporting files within the *.mbox package.
In Mail, do File > Import Mailboxes. I’m not sure what the import options available in Mail 1.3 are, but you should choose Other / Standard mbox, or something like that. Follow the instructions to import the Junk.mbox package that’s within the ~/Library/Mail/POP-username@mailserver/ account folder.
Importing as Other / Standard mbox causes Mail to look at the mbox file only, ignoring the supporting files that keep track of which messages are read/unread, marked for deletion, etc., thus causing any previously deleted messages that might remain there to reappear.

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