Acrobat 9 and indesign CS4

I have been using layers in acrobat 9 pro to do some hide/show layers with javascript. The problem i ran into is that if i needed to update the pdf, i would loose the layers i had created in the pdf and/or the javascript. I could preserve the javascript by using 'replace' pages in acrobat but the layers would be lost.
I then decided to get indesign where i could create layers and then export them to the pdf, so every time i needed to redo the pdf, I didn't have to recreate the layers.
PROBLEM
If i create interactive buttons in indesign and then export them to a pdf, the pdf created is fine including interaction buttosn. However if i try to then update the original document by using 'replace' pages (this lets me keep the javascript), the buttons all disappear.
Below is the pdf from indesign which functions correctly with the buttons.
Below is the original pdf after i have imported the above using 'replace' pages. The buttons are still there and the mouse over works, but the images have disappeared including the prev/next arrows.
What gives adobe. I have checked and double checked all settings for the export including layers, hyperlinks, objects, embed, you name it but no joy.
Thanks to anyone with an answer.

This thread can be closed.
I had inadvertently tried to replace pages from an indesign created pdf into a non indesign created pdf and this created the problem.
Once i create the pdf from indesign and then add the javascript to the exported interactions in acrobat, i can replace pages with no problem once i continue to create them with indesign which exports the layers. This way my layers and javascript all stay intact and i can happily keep recreating the pdf without lots of work on the backend.
What acrobat does do is create a separate layer for the interactive buttons in the newly replaced document which i can then just merge into the page. which forms my background.
I hope this helps someone else.

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