Acrobat 9 Pro won't save bookmarks! Why?

So this is a really weird thing that's been happening lately: I'll go through a PDF and add a bunch of bookmarks (it's an ebook that's been formatted, but with no chapter bookmarks set up), and I'll save it - and the bookmarks don't get saved! Anything else I do to the file comes through fine, though. Why is this happening, and how do I fix it? Anybody know?

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